genewise output
Score 248.29 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000077_2.0    1 MSLLLPPLALLLLLAALVAPATAATAYRPDWNRLSGLTRARVE       
                     MSLLLPPLALLLLLAALVAPATAATAYRPDWNRLSGLTRARVE       
                     MSLLLPPLALLLLLAALVAPATAATAYRPDWNRLSGLTRARVE       
gi|511782574|g-52493 aacctcccgcccccggcggcgaggagtccgtaccagcacgcgg       
                     tgtttcctctttttccttccccccccagcagagtggtcgcgta       
                     gccggtggggggtcggtgcacacctccggcgttgccgcccgag       


SPP00000077_2.0   44                        TCGGXQLNRLKE               
                                            TCGGXQLNRLKE               
                                            TCGGXQLNRLKE               
gi|511782574|g-52364 GTGAGTA  Intron 1   CAGatggtccaccag               
                     <0-----[52364:50943]-0>cggggatagtaa               
                                            ctgaaggtcagg               


SPP00000077_2.0   56                        VKAFVTQDIPF                
                                            VKAFVTQDIPF                
                                            VKAFVTQDIPF                
gi|511782574|g-50906 GTGAGTT  Intron 2   CAGgagtgacgact                
                     <0-----[50906:50691]-0>tacttcaatct                
                                            ggtcccgctac                


SPP00000077_2.0   67                           HNLVMKHLPGADPELVLLGRRYE 
                                               HNLVMKHLPGADPELVLLGRRYE 
                                Y:Y[tat]       HNLVMKHLPGADPELVLLGRRYE 
gi|511782574|g-50657 TAGTATCCT  Intron 3   CAGTcacgaacccgggcgcgccgcctg 
                       <2-----[50655:50314]-2> aatttaatcgcacattttgggaa 
                                               ccgggacctgcctgcgggccccg 


SPP00000077_2.0   91 ELE                       RIPLSEMTREEINALVQELGFYR 
                     ELE                       RIPLSEMTREEINALVQELGFYR 
                     ELE                       RIPLSEMTREEINALVQELGFYR 
gi|511782574|g-50243 gcgGTGAGGC  Intron 4   CAGcaccagaacggaagcgcgcgttc 
                     ata<0-----[50234:50156]-0>gtctgatcgaatacttaatgtag 
                     agg                       cagctagccagccgggggctccc 


SPP00000077_2.0  117 KAAPDAQVPPEYVWAPAKPPEETSDHADL                     
                     KAAPDAQVPPEYVWAPA+PPEETSDHADL                     
                     KAAPDAQVPPEYVWAPARPPEETSDHADL                     
gi|511782574|g-50086 aggcggcgccgtgtgcgaccggatgcggc                     
                     acccacatccaatgcccgccaaccaacat                     
                     gggccgggccgcgggctgcggatgccccg                     


//
Making a Y in phase 2 intron
>gi|511782574|gb|CM001960.1|:subseq(13946501,100312).pep
MSLLLPPLALLLLLAALVAPATAATAYRPDWNRLSGLTRARVETCGGXQLNRLKEVKAFV
TQDIPFYHNLVMKHLPGADPELVLLGRRYEELERIPLSEMTREEINALVQELGFYRKAAP
DAQVPPEYVWAPARPPEETSDHADL
//
>gi|511782574|gb|CM001960.1|:subseq(13946501,100312).[52493:49998].sp
ATGAGCCTCCTGTTGCCTCCGCTGGCGCTGCTGCTGCTTCTCGCGGCGCTTGTGGCCCCA
GCCACAGCCGCCACTGCCTACCGGCCGGACTGGAATCGTCTGAGCGGCCTGACCCGCGCC
CGGGTAGAGACCTGTGGGGGATGACAGCTGAATCGCCTAAAGGAGGTGAAGGCTTTCGTC
ACCCAGGACATTCCATTCTATCACAACCTGGTGATGAAACACCTCCCTGGGGCCGACCCT
GAGCTCGTGCTGCTGGGCCGCCGCTACGAGGAACTGGAGCGCATACCGCTCAGTGAAATG
ACCCGCGAAGAGATCAACGCGCTGGTGCAGGAGCTCGGTTTCTACCGCAAGGCGGCGCCC
GACGCGCAGGTGCCCCCCGAGTACGTGTGGGCGCCCGCTAGGCCCCCGGAGGAAACTTCG
GACCACGCCGACCTG
//
gi|511782574|gb|CM001960.1|:subseq(13946501,100312)	GeneWise	match	52493	50000	248.29	-	.	gi|511782574|gb|CM001960.1|:subseq(13946501,100312)-genewise-prediction-1
gi|511782574|gb|CM001960.1|:subseq(13946501,100312)	GeneWise	cds	52493	52365	0.00	-	0	gi|511782574|gb|CM001960.1|:subseq(13946501,100312)-genewise-prediction-1
gi|511782574|gb|CM001960.1|:subseq(13946501,100312)	GeneWise	intron	52364	50943	0.00	-	.	gi|511782574|gb|CM001960.1|:subseq(13946501,100312)-genewise-prediction-1
gi|511782574|gb|CM001960.1|:subseq(13946501,100312)	GeneWise	cds	50942	50907	0.00	-	0	gi|511782574|gb|CM001960.1|:subseq(13946501,100312)-genewise-prediction-1
gi|511782574|gb|CM001960.1|:subseq(13946501,100312)	GeneWise	intron	50906	50691	0.00	-	.	gi|511782574|gb|CM001960.1|:subseq(13946501,100312)-genewise-prediction-1
gi|511782574|gb|CM001960.1|:subseq(13946501,100312)	GeneWise	cds	50690	50656	0.00	-	0	gi|511782574|gb|CM001960.1|:subseq(13946501,100312)-genewise-prediction-1
gi|511782574|gb|CM001960.1|:subseq(13946501,100312)	GeneWise	intron	50655	50314	0.00	-	.	gi|511782574|gb|CM001960.1|:subseq(13946501,100312)-genewise-prediction-1
gi|511782574|gb|CM001960.1|:subseq(13946501,100312)	GeneWise	cds	50313	50235	0.00	-	1	gi|511782574|gb|CM001960.1|:subseq(13946501,100312)-genewise-prediction-1
gi|511782574|gb|CM001960.1|:subseq(13946501,100312)	GeneWise	intron	50234	50156	0.00	-	.	gi|511782574|gb|CM001960.1|:subseq(13946501,100312)-genewise-prediction-1
gi|511782574|gb|CM001960.1|:subseq(13946501,100312)	GeneWise	cds	50155	50000	0.00	-	0	gi|511782574|gb|CM001960.1|:subseq(13946501,100312)-genewise-prediction-1
//