Command line: [exonerate -m p2g --showtargetgff -q SelK.aa.fa.U_to_X -t gi|511782571|gb|CM001963.1|.fastasubseq]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000076_2.0 # Protein # Selenoprotein K (SelK) # Human (Homo sapiens) 
        Target: gi|511782571|gb|CM001963.1|:subseq(15219708,101629) Chlorocebus sabaeus isolate 1994-021 chromosome 22, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 465
   Query range: 0 -> 94
  Target range: 55024 -> 48961

     1 : MetValTyrIleSerAsn{G}  >>>> Target Intron 1 >>>>  {ly}GlnVal :     9
         ||||||||||||||||||{|}           3389 bp           {||}||||||
         MetValTyrIleSerAsn{G}++                         ++{ly}GlnVal
 55024 : ATGGTTTACATCTCGAAC{G}gt.........................ag{GA}CAAGTG : 51611

    10 : LeuAspSerArgSerGlnSerProTrpArgLeuSerLeuIleThrAspPhePheTrpGly :    29
         ||||||||||||||||||||||||||||||||||||!!!|||||||||||||||||||||
         LeuAspSerArgSerGlnSerProTrpArgLeuSerPheIleThrAspPhePheTrpGly
 51610 : TTGGACAGCCGGAGTCAGTCTCCATGGAGATTATCTTTCATAACAGATTTCTTCTGGGGA : 51551

    30 : IleAlaGluPheValValLeu{Ph}  >>>> Target Intron 2 >>>>  {e}Phe :    38
         |||||||||||||||||||||{||}           1450 bp           {|}|||
         IleAlaGluPheValValLeu{Ph}++                         ++{e}Phe
 51550 : ATAGCTGAGTTTGTGGTTTTG{TT}gt.........................ag{T}TTC : 50074

    39 : LysThrLeuLeuGlnGlnAspValLysLysArgArgSerTyrGlyAsnSerSerAspSer :    58
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         LysThrLeuLeuGlnGlnAspValLysLysArgArgSerTyrGlyAsnSerSerAspSer
 50073 : AAAACTCTGCTTCAGCAAGATGTGAAAAAAAGAAGAAGCTATGGAAACTCATCTGATTCC : 50014

    59 : ArgTyrAspAspGlyArg{Gl}  >>>> Target Intron 3 >>>>  {y}ProPro :    67
         ||||||||||||||||||{||}            942 bp           {|}||||||
         ArgTyrAspAspGlyArg{Gl}++                         ++{y}ProPro
 50013 : AGATATGATGATGGAAGA{GG}gt.........................ag{G}CCACCG : 49045

    68 : GlyAsnProProArgArgMetGlyArgIleAsnHisLeuArgGlyProSerProProPro :    87
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         GlyAsnProProArgArgMetGlyArgIleAsnHisLeuArgGlyProSerProProPro
 49044 : GGAAACCCTCCCCGAAGAATGGGTAGAATCAATCATCTGCGTGGCCCTAGTCCTCCTCCA : 48985

    88 : MetAlaGlyGlyUnkGlyArg :    94
         ||||||||||||   ||||||
         MetAlaGlyGly***GlyArg
 48984 : ATGGCGGGTGGATGAGGAAGG : 48962

vulgar: SPP00000076_2.0 0 94 . gi|511782571|gb|CM001963.1|:subseq(15219708,101629) 55024 48961 - 465 M 6 18 S 0 1 5 0 2 I 0 3385 3 0 2 S 1 2 M 29 87 S 0 2 5 0 2 I 0 1446 3 0 2 S 1 1 M 27 81 S 0 2 5 0 2 I 0 938 3 0 2 S 1 1 M 29 87
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-04
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|511782571|gb|CM001963.1|:subseq(15219708,101629)	exonerate:protein2genome:local	gene	48962	55024	465	-	.	gene_id 1 ; sequence SPP00000076_2.0 ; gene_orientation +
gi|511782571|gb|CM001963.1|:subseq(15219708,101629)	exonerate:protein2genome:local	cds	55006	55024	.	-	.	
gi|511782571|gb|CM001963.1|:subseq(15219708,101629)	exonerate:protein2genome:local	exon	55006	55024	.	-	.	insertions 0 ; deletions 0
gi|511782571|gb|CM001963.1|:subseq(15219708,101629)	exonerate:protein2genome:local	splice5	55004	55005	.	-	.	intron_id 1 ; splice_site "GT"
gi|511782571|gb|CM001963.1|:subseq(15219708,101629)	exonerate:protein2genome:local	intron	51617	55005	.	-	.	intron_id 1
gi|511782571|gb|CM001963.1|:subseq(15219708,101629)	exonerate:protein2genome:local	splice3	51617	51618	.	-	.	intron_id 0 ; splice_site "AG"
gi|511782571|gb|CM001963.1|:subseq(15219708,101629)	exonerate:protein2genome:local	cds	51526	51616	.	-	.	
gi|511782571|gb|CM001963.1|:subseq(15219708,101629)	exonerate:protein2genome:local	exon	51526	51616	.	-	.	insertions 0 ; deletions 0
gi|511782571|gb|CM001963.1|:subseq(15219708,101629)	exonerate:protein2genome:local	splice5	51524	51525	.	-	.	intron_id 2 ; splice_site "GT"
gi|511782571|gb|CM001963.1|:subseq(15219708,101629)	exonerate:protein2genome:local	intron	50076	51525	.	-	.	intron_id 2
gi|511782571|gb|CM001963.1|:subseq(15219708,101629)	exonerate:protein2genome:local	splice3	50076	50077	.	-	.	intron_id 1 ; splice_site "AG"
gi|511782571|gb|CM001963.1|:subseq(15219708,101629)	exonerate:protein2genome:local	cds	49992	50075	.	-	.	
gi|511782571|gb|CM001963.1|:subseq(15219708,101629)	exonerate:protein2genome:local	exon	49992	50075	.	-	.	insertions 0 ; deletions 0
gi|511782571|gb|CM001963.1|:subseq(15219708,101629)	exonerate:protein2genome:local	splice5	49990	49991	.	-	.	intron_id 3 ; splice_site "GT"
gi|511782571|gb|CM001963.1|:subseq(15219708,101629)	exonerate:protein2genome:local	intron	49050	49991	.	-	.	intron_id 3
gi|511782571|gb|CM001963.1|:subseq(15219708,101629)	exonerate:protein2genome:local	splice3	49050	49051	.	-	.	intron_id 2 ; splice_site "AG"
gi|511782571|gb|CM001963.1|:subseq(15219708,101629)	exonerate:protein2genome:local	cds	48962	49049	.	-	.	
gi|511782571|gb|CM001963.1|:subseq(15219708,101629)	exonerate:protein2genome:local	exon	48962	49049	.	-	.	insertions 0 ; deletions 0
gi|511782571|gb|CM001963.1|:subseq(15219708,101629)	exonerate:protein2genome:local	similarity	48962	55024	465	-	.	alignment_id 1 ; Query SPP00000076_2.0 ; Align 55025 1 18 ; Align 51615 8 87 ; Align 50075 38 81 ; Align 49049 66 87
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis