genewise output
Score 17.42 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000076_2.0   65 GPPGNPPRRMGRINHLRGPSPPPMAGGXG                     
                     G  G  PR + R +   GP+    AGG+G                     
                     GVVGARPRLLTRGDSAEGPTVEARAGGAG                     
gi|511782571|gb 8807 gggggcccccacggtgggcagggaggggg                     
                     gttgcgcgttcggaccagcctacgcggcg                     
                     cccggtggaccgccgcgcgacgcagaagt                     


//
>gi|511782571|gb|CM001963.1|:subseq(15219708,101629).pep
GVVGARPRLLTRGDSAEGPTVEARAGGAG
//
>gi|511782571|gb|CM001963.1|:subseq(15219708,101629).[8807:8893].sp
GGCGTCGTCGGGGCGCGTCCGCGGCTACTCACCCGGGGCGACTCGGCCGAGGGCCCGACA
GTCGAGGCCAGAGCGGGAGGAGCGGGT
//
gi|511782571|gb|CM001963.1|:subseq(15219708,101629)	GeneWise	match	8807	8893	17.42	+	.	gi|511782571|gb|CM001963.1|:subseq(15219708,101629)-genewise-prediction-1
gi|511782571|gb|CM001963.1|:subseq(15219708,101629)	GeneWise	cds	8807	8893	0.00	+	0	gi|511782571|gb|CM001963.1|:subseq(15219708,101629)-genewise-prediction-1
//

genewise output
Score 182.13 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000076_2.0    3 YISNGQVLDSRSQSPWRLSLITDFFWGIAEFVVL                
                     ++S GQVLDSRSQSPWRLS ITDFFWGIAEFVVL                
                     FLSVGQVLDSRSQSPWRLSFITDFFWGIAEFVVL                
gi|511782571|g-51629 tttggcgtgacactctatttaagtttgaggtggt                
                     ttctgattagggaccggtcttcattggtcatttt                
                     cgtaaaggccgtgtagaatcaatccgaatgtgtg                


SPP00000076_2.0   37                           FKTLLQQDVKKRRSYGNSSDSRY 
                                               FKTLLQQDVKKRRSYGNSSDSRY 
                                F:F[ttt]       FKTLLQQDVKKRRSYGNSSDSRY 
gi|511782571|g-51527 TTGTAAGTA  Intron 1   CAGTtaaccccggaaaaatgattgtat 
                       <2-----[51525:50076]-2> tacttaaataagggagaccacga 
                                               catgtgatgaaaactacattcat 


SPP00000076_2.0   61 DDGR                          PPGNPPRRMGRINHLRGPS 
                     DDGR                          PPGNPPRRMGRINHLRGPS 
                     DDGR           G:G[ggg]       PPGNPPRRMGRINHLRGPS 
gi|511782571|g-50005 gggaGGGTACGGC  Intron 2   TAGGccgacccaagaaacccgca 
                     aagg  <2-----[49991:49050]-2> ccgaccggtggtaatggcg 
                     ttaa                          agactcaagtacttgtctt 


SPP00000076_2.0   85 PPPMAGG                                           
                     PPPMAGG                                           
                     PPPMAGG                                           
gi|511782571|g-48991 cccaggg                                           
                     ccctcgg                                           
                     ttaggta                                           


//
Making a F in phase 2 intron
Making a G in phase 2 intron
>gi|511782571|gb|CM001963.1|:subseq(15219708,101629).pep
FLSVGQVLDSRSQSPWRLSFITDFFWGIAEFVVLFFKTLLQQDVKKRRSYGNSSDSRYDD
GRGPPGNPPRRMGRINHLRGPSPPPMAGG
//
>gi|511782571|gb|CM001963.1|:subseq(15219708,101629).[51629:48969].sp
TTCTTGTCTGTAGGACAAGTGTTGGACAGCCGGAGTCAGTCTCCATGGAGATTATCTTTC
ATAACAGATTTCTTCTGGGGAATAGCTGAGTTTGTGGTTTTGTTTTTCAAAACTCTGCTT
CAGCAAGATGTGAAAAAAAGAAGAAGCTATGGAAACTCATCTGATTCCAGATATGATGAT
GGAAGAGGGCCACCGGGAAACCCTCCCCGAAGAATGGGTAGAATCAATCATCTGCGTGGC
CCTAGTCCTCCTCCAATGGCGGGTGGA
//
gi|511782571|gb|CM001963.1|:subseq(15219708,101629)	GeneWise	match	51629	48971	182.13	-	.	gi|511782571|gb|CM001963.1|:subseq(15219708,101629)-genewise-prediction-1
gi|511782571|gb|CM001963.1|:subseq(15219708,101629)	GeneWise	cds	51629	51526	0.00	-	0	gi|511782571|gb|CM001963.1|:subseq(15219708,101629)-genewise-prediction-1
gi|511782571|gb|CM001963.1|:subseq(15219708,101629)	GeneWise	intron	51525	50076	0.00	-	.	gi|511782571|gb|CM001963.1|:subseq(15219708,101629)-genewise-prediction-1
gi|511782571|gb|CM001963.1|:subseq(15219708,101629)	GeneWise	cds	50075	49992	0.00	-	1	gi|511782571|gb|CM001963.1|:subseq(15219708,101629)-genewise-prediction-1
gi|511782571|gb|CM001963.1|:subseq(15219708,101629)	GeneWise	intron	49991	49050	0.00	-	.	gi|511782571|gb|CM001963.1|:subseq(15219708,101629)-genewise-prediction-1
gi|511782571|gb|CM001963.1|:subseq(15219708,101629)	GeneWise	cds	49049	48971	0.00	-	1	gi|511782571|gb|CM001963.1|:subseq(15219708,101629)-genewise-prediction-1
//