_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 2e-11
 Query name: gi|270288769|ref|NP_001161868.1| selenoprotein K [Equus caballus]
 Query range: 1-94  (total 94)

 Target: /var/www/seblastian_output/185499575/tempfiles/temptarget.fasta
 Chromosome: gi|511782571|gb|CM001963.1| Strand: -
 Positions:
 -Exon 1  105015       105033
 -Exon 2  101535       101625
 -Exon 3  100001       100084
 -Exon 4  98971        99058

 Redox box: no

Query   MVYISNG <---Intron---> QVLDSRSQSPWRLSFITDFFWGIAEFVVLFF <---Intron---> KTLLQQDVKKRRGYGSSSDSRYDDGRGP <
        ||||||| <   3389bp   > ||||||||||||||||||||||||||||||| <   1450bp   > |||||||||||| ||/|||||||||||| <
Target  MVYISNG                QVLDSRSQSPWRLSFITDFFWGIAEFVVLFF                KTLLQQDVKKRRSYGNSSDSRYDDGRGP  
        agtatag                cgtgacactctatttaagtttgaggtggttt                aaccccggaaaaatgattgtatgggagc  
        ttatca                gattagggaccggtcttcattggtcattttt                tacttaaataagggagaccacgaaagggc  
        gtccgc                aaggccgtgtagaatcaatccgaatgtgtgt                catgtgatgaaaactacattcatttaaga  
                                                                                                            

Query   ---Intron---> PGNPRRRMGRINHLHGPSPPPMAGGUGR
           942bp    > |||| ||||||||| |||||||||||||
Target                PGNPPRRMGRINHLRGPSPPPMAGGUGR
                      cgacccaagaaacccgcacccagggtga
                      cgaccggtggtaatggcgccctcggggg
                      gactcaagtacttgtcttttaggtaaag
                                               *  
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 385 ; UGA-SECIS: 391

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = gi|511782571|gb|CM001963.1| Strand = - Positions = 98585 - 98498
 Found by:  Infernal (score=24.37) Covels (score=36.14)
 Stem2 length = 9   Apical loop length = 19   Insertion in stem2 = 0, 0
 Free Energy = -10.51

         ..(((((((..............(((((((((((((((.................)))))))))))))))..........)))))))..
 model   uucggucaugcg-------UuaAUGAcGgccuggcccuAAAcC--cuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         ...({((((..............{[[((((({(((((...................)))))})))))]]}......-...))))})...
 target  UGCUCUGUGUCCUCACAGAUGAAUGAGGUCAUGCUAGGAAUUCCCUCUACAGGGAACUGGCCUGACUGACAUGCAG-UUCCAUAAAUGC
                                ****           ^^                          ****