Command line: [exonerate -m p2g --showtargetgff -q SelK_1.fa.U_to_X -t gi|511782579|gb|CM001955.1|.fastasubseq]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00001340_2.0 # Protein # Selenoprotein K (SelK) # Macaque (Macaca mulatta) 
        Target: gi|511782579|gb|CM001955.1|:subseq(65962454,200239) Chlorocebus sabaeus isolate 1994-021 chromosome 14, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 439
   Query range: 0 -> 93
  Target range: 100239 -> 99957

      1 : MetValTyrValSerAsnGlyGlnValLeuAspSerGlnSerGlnSerProTrpArgL :     20
          |||||||||:!!||||||||||||||||||||||||||||||||||||||||||||||
          MetValTyrIleSerAsnGlyGlnValLeuAspSerGlnSerGlnSerProTrpArgL
 100239 : ATGGTTTACATCTCGAACGGACAAGTGTTGGACAGCCAGAGTCAGTCTCCATGGAGAT : 100182

     21 : euSerLeuIleThrAspPhePheTrpGlyIleAlaLysPheGluValLeuPhePheLy :     39
          |||||!!!|||||||||||||||||||||||||||:!!|||! !||||||||||||!:
          euSerPheIleThrAspPhePheTrpGlyIleAlaGluPheValValLeuPhePheAr
 100181 : TATCTTTCATAACAGATTTCTTCTGGGGAATAGCTGAGTTTGTGGTTTTGTTTTTCAG : 100125

     40 : sThrLeuLeuGlnGlnAspValLysLysArg<->SerTyrGlyAsnSerSerAspSer :     57
          !||||||||||||||||||||||||||||||   ||||||||||||||||||||||||
          gThrLeuLeuGlnGlnAspValLysLysArgSerSerTyrGlyAsnSerSerAspSer
 100124 : AACTCTGCTTCAGCAAGATGTGAAAAAAAGAAGCAGCTATGGAAACTCATCTGATTCC : 100068

     58 : ArgTyrAsnAspGlyArgGlyProProGlyAsnProProGlnArgMetGlyArgIleA :     77
          ||||||:!!||||||||||||||||||||||||||||||!:!||||||||||||||||
          ArgTyrAspAspGlyArgGlyProProGlyAsnProProArgArgMetGlyArgIleA
 100067 : AGATATGATGATGGAAGAGGGCCACCGGGAAACCCTCCCCGAAGAATGGGTAGAATCA : 100008

     78 : snHisLeuHisGlyProSerProProProValAlaGlyGlyUnkGlyArg :     93
          ||||||||!.!||||||||||||||||||:!!|||||||||   ||||||
          snHisLeuArgGlyProSerProProProMetAlaGlyGly***GlyArg
 100007 : ATCATCTGCGTGGCCCTAGTCCTCCTCCAATGGCGGGTGGATGAGGAAGG :  99958

vulgar: SPP00001340_2.0 0 93 . gi|511782579|gb|CM001955.1|:subseq(65962454,200239) 100239 99957 - 439 M 49 147 G 0 3 M 44 132
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-05
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|511782579|gb|CM001955.1|:subseq(65962454,200239)	exonerate:protein2genome:local	gene	99958	100239	439	-	.	gene_id 1 ; sequence SPP00001340_2.0 ; gene_orientation .
gi|511782579|gb|CM001955.1|:subseq(65962454,200239)	exonerate:protein2genome:local	cds	99958	100239	.	-	.	
gi|511782579|gb|CM001955.1|:subseq(65962454,200239)	exonerate:protein2genome:local	exon	99958	100239	.	-	.	insertions 3 ; deletions 0
gi|511782579|gb|CM001955.1|:subseq(65962454,200239)	exonerate:protein2genome:local	similarity	99958	100239	439	-	.	alignment_id 1 ; Query SPP00001340_2.0 ; Align 100240 1 147 ; Align 100090 50 132
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis