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_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
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 Blastx evalue: 2e-29
 Query name: gi|25014099|ref|NP_067060.2| selenoprotein K [Homo sapiens] >gi|168823448|ref|NP_001108349.1| selenoprotein K [Pan troglodytes] >gi|226874800|ref|NP_001152853.1| selenoprotein K [Macaca mulatta] >gi|190352222|sp|Q9Y6D0.3|SELK_HUMAN RecName: Full=Selenoprotein K; Short=SelK >gi|190352223|sp|Q4R8M1.3|SELK_MACFA RecName: Full=Selenoprotein K; Short=SelK >gi|24431324|gb|AAN61473.1| selenoprotein K [Homo sapiens] >gi|34783186|gb|AAH13162.2| Selenoprotein K [Homo sapiens]
 Query range: 1-94  (total 94)

 Target: /var/www/seblastian_output/793784805/tempfiles/temptarget.fasta
 Chromosome: gi|511782579|gb|CM001955.1| Strand: -
 Positions:
 -Exon 1  99958        100239

 Redox box: no

Query   MVYISNGQVLDSRSQSPWRLSLITDFFWGIAEFVVLFFKTLLQQDVKKRRSYGNSSDSRYDDGRGPPGNPPRRMGRINHLRGPSPPPMAGGUGR
        ||||||||||||/|||||||| ||||||||||||||||/|||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Target  MVYISNGQVLDSQSQSPWRLSFITDFFWGIAEFVVLFFRTLLQQDVKKRSSYGNSSDSRYDDGRGPPGNPPRRMGRINHLRGPSPPPMAGGUGR
        agtatagcgtgacactctatttaagtttgaggtggtttaaccccggaaaaatgattgtatgggagccgacccaagaaacccgcacccagggtga
        ttatcagattagagaccggtcttcattggtcattttttgcttaaataagggagaccacgaaagggccgaccggtggtaatggcgccctcggggg
        gtccgcaaggccgtgtagaatcaatccgaatgtgtgtcatgtgatgaaacctacattcatttaagagactcaagtacttgtcttttaggtaaag
                                                                                                   *  
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 121 ; UGA-SECIS: 127

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = gi|511782579|gb|CM001955.1| Strand = - Positions = 99836 - 99749
 Found by:  Infernal (score=24.37) Covels (score=36.14)
 Stem2 length = 9   Apical loop length = 19   Insertion in stem2 = 0, 0
 Free Energy = -10.51

         ..(((((((..............(((((((((((((((.................)))))))))))))))..........)))))))..
 model   uucggucaugcg-------UuaAUGAcGgccuggcccuAAAcC--cuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         ...({((((..............{[[((((({(((((...................)))))})))))]]}......-...))))})...
 target  UGCUCUGUGUCCUCACAGAUGAAUGAGGUCAUGCUAGGAAUUCCCUCUACAGGGAACUGGCCUGACUGACAUGCAG-UUCCAUAAAUGC
                                ****           ^^                          ****