Command line: [exonerate -m p2g --showtargetgff -q SelK_1.fa.U_to_X -t gi|511782580|gb|CM001954.1|.fastasubseq]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00001340_2.0 # Protein # Selenoprotein K (SelK) # Macaque (Macaca mulatta) 
        Target: gi|511782580|gb|CM001954.1|:subseq(41644503,200242) Chlorocebus sabaeus isolate 1994-021 chromosome 13, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 407
   Query range: 0 -> 93
  Target range: 99999 -> 100284

      1 : MetValTyrValSerAsnGlyGlnValLeuAspSerGlnSerGlnSerProTrpArgL :     20
          |||||||||:!!||||||||||||||||||||||||  !|||||||||||||||||||
          MetValTyrIleSerAsnGlyGlnValLeuAspSerTrpSerGlnSerProTrpArgL
 100000 : ATGGTTTACATCTCGAATGGACAAGTGTTGGACAGCTGGAGTCAGTCTCCATGGAGAT : 100057

     21 : euSerLeuIleThrAspPhePheTrpGlyIleAlaLysPheGluValLeuPhePheLy :     39
          |||||||||||||||||||||||||||||||||||:!!|||! !||||||.!!|||||
          euSerLeuIleThrAspPhePheTrpGlyIleAlaGluPheValValLeuLeuPheLy
 100058 : TATCCTTGATAACAGATTTCTTCTGGGGAATAGCAGAGTTTGTGGTTTTGCTTTTCAA : 100114

     40 : sThrLeuLeuGlnGlnAsp<-><->ValLysLysArgSerTyrGlyAsnSerSerAsp :     56
          |||||||||||||||||||        !||||||||||||||||||||||||||||||
          sThrLeuLeuGlnGlnAspGluGluLysLysLysArgSerTyrGlyAsnSerSerAsp
 100115 : AACTCTGCTTCAGCAAGATGAGGAAAAAAAAAAAAGAAGCTATGGAAATTCATCTGAT : 100171

     57 : SerArgTyrAsnAspGlyArgGlyProProGlyAsnProProGlnArgMetGlyArgI :     76
          |||||||||:!!|||||||||||| !!! !||||||||||||||||||||||||||||
          SerArgTyrAspAspGlyArgGlySerGlnGlyAsnProProGlnArgMetGlyArgI
 100172 : TCCAGATATGATGATGGAAGAGGGTCACAGGGAAATCCTCCCCAAAGAATGGGTCGAA : 100231

     77 : leAsnHisLeuHisGlyProSerProProProValAlaGlyGlyUnkGlyArg :     93
          |||||||||||!.!||||||||||||||||||:!!|||||||||   ||||||
          leAsnHisLeuArgGlyProSerProProProMetAlaGlyGly***GlyArg
 100232 : TCAATCATTTGCGTGGCCCCAGTCCTCCTCCAATGGCTGGTGGATGAGGAAGG : 100284

vulgar: SPP00001340_2.0 0 93 . gi|511782580|gb|CM001954.1|:subseq(41644503,200242) 99999 100284 + 407 M 45 135 G 0 6 M 48 144
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-05
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|511782580|gb|CM001954.1|:subseq(41644503,200242)	exonerate:protein2genome:local	gene	100000	100284	407	+	.	gene_id 1 ; sequence SPP00001340_2.0 ; gene_orientation .
gi|511782580|gb|CM001954.1|:subseq(41644503,200242)	exonerate:protein2genome:local	cds	100000	100284	.	+	.	
gi|511782580|gb|CM001954.1|:subseq(41644503,200242)	exonerate:protein2genome:local	exon	100000	100284	.	+	.	insertions 6 ; deletions 0
gi|511782580|gb|CM001954.1|:subseq(41644503,200242)	exonerate:protein2genome:local	similarity	100000	100284	407	+	.	alignment_id 1 ; Query SPP00001340_2.0 ; Align 100000 1 135 ; Align 100141 46 144
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis