Command line: [exonerate -m p2g --showtargetgff -q SelK_1.fa.U_to_X -t gi|511782587|gb|CM001946.1|.fastasubseq]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00001340_2.0 # Protein # Selenoprotein K (SelK) # Macaque (Macaca mulatta) 
        Target: gi|511782587|gb|CM001946.1|:subseq(32256213,200242) Chlorocebus sabaeus isolate 1994-021 chromosome 6, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 341
   Query range: 0 -> 89
  Target range: 100242 -> 99969

      1 : MetValTyrValSerAsnGlyGlnValLeuAspSerGlnSerGlnSerProTrpArgL :     20
          |||||||||:!!||||||!.!|||||||||||||||  !||||||! !||||||||||
          MetValTyrIleSerAsnAlaGlnValLeuAspSerTrpSerGlnPheProTrpArgL
 100242 : ATGGTTTACATCTCAAATGCACAAGTGTTGGACAGCTGGAGTCAGTTTCCATGGAGAT : 100185

     21 : euSerLeuIleThrAspPhePheTrpGlyIleAlaLysPheGluValLeuPhePheLy :     39
          |||||||||||||||||||||||||||||||||||||||||! !||||||||||||||
          euSerLeuIleThrAspPhePheTrpGlyIleAlaLysPheValValLeuPhePheLy
 100184 : TATCTTTGATAACAGATTTCTTCTGGGGAATAGCTAAGTTTGTGGTTTTGTTTTTCAA : 100128

     40 : sThrLeuLeuGlnGlnAspValLysLysArg<->SerTyrGlyAsnSerSerAspSer :     57
          |||||||||||||||||||:!!|||||||||   |||||||||||||||!!!||||||
          sThrLeuLeuGlnGlnAspLeuLysLysArgSerSerTyrGlyAsnSerCysAspSer
 100127 : AACTCTGCTTCAGCAAGATTTGAAAAAAAGAAGCAGCTATGGAAACTCATGTGATTCC : 100071

     58 : ArgTyrAsn<->AspGlyArgGlyProProGlyAsnProProGlnArgMetGlyArgI :     76
          ||||||:!!   :!!||||||||||||! !||||||||||||  !|||||||||! !|
          ArgTyrAspGlyAsnGlyArgGlyProLeuGlyAsnProProGlyArgMetGlyProI
 100070 : AGATATGATGGTAATGGAAGAGGGCCACTGGGAAACCCTCCCGGAAGAATGGGTCCAA : 100011

     77 : leAsnHisLeuHisGlyProSerProProProValAlaGly :     89
          |||||||||||  !||||||||||||! !  !!.!..!|||
          leAsnHisLeuGlyGlyProSerProLeuMetAlaCysGly
 100010 : TCAATCATCTGGGTGGCCCCAGTCCTCTAATGGCTTGTGGA :  99970

vulgar: SPP00001340_2.0 0 89 . gi|511782587|gb|CM001946.1|:subseq(32256213,200242) 100242 99969 - 341 M 49 147 G 0 3 M 11 33 G 0 3 M 29 87
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-05
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|511782587|gb|CM001946.1|:subseq(32256213,200242)	exonerate:protein2genome:local	gene	99970	100242	341	-	.	gene_id 1 ; sequence SPP00001340_2.0 ; gene_orientation .
gi|511782587|gb|CM001946.1|:subseq(32256213,200242)	exonerate:protein2genome:local	cds	99970	100242	.	-	.	
gi|511782587|gb|CM001946.1|:subseq(32256213,200242)	exonerate:protein2genome:local	exon	99970	100242	.	-	.	insertions 6 ; deletions 0
gi|511782587|gb|CM001946.1|:subseq(32256213,200242)	exonerate:protein2genome:local	similarity	99970	100242	341	-	.	alignment_id 1 ; Query SPP00001340_2.0 ; Align 100243 1 147 ; Align 100093 50 33 ; Align 100057 61 87
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis