Output_id:  SelK.8.pseudo
----------  -------------
-Species        Chlorocebus sabaeus                          -Taxid 60711
-Target         /home/U73970/luke/Selenoprofiles/selenoprofiles_3_installation/genome_linked/genome.fa
-Chromosome (-) gi|511782587|gb|CM001946.1|
-Program        exonerate
-Query name     gi|87047634|gb|ABD18450.1| MODIFIED selenoprotein K [Sus scrofa]
-Query range    20-94      length:94    coverage: 0.8
-Profile range  34-152     length:153   coverage: 0.78    sec_position: [150]
-ASI:           0.3689     (ignoring gaps: 0.4214)
-AWSIc:         0.4912     Z-score: -0.461
-AWSIw:         0.6493     Z-score: 0.583
-State          kept

------- alignment -------
Query   LSFITDFFWGIAEFVVLFFRTLLQQ ! FRAME ! DVKKRRGYGGSSDSRYDDGRGPPGNPPRRMGRINHLRGPNPPPMAG <---Intron---> GU
        || ||||||||| ||||||/||||| ! SHIFT ! ||  //||| |||| || |/ |||| | ||||||/|  |/|||||| <  60779nt   > ||
Target  LSLITDFFWGIA*FVVLFFKTLLQQ    1nt    DVGGKKGYGNSSDSGYDGGKQPPGNSPGRMGRINNLSDPSPPPMAG                GU
        tttaagtttgagttggtttaacccc           ggggaagtgattgtgtgggacccgatcgaagcaaacagcacccagg                gt
        tcttcattggtcattttttacttaa     a     atggaagagaccacgaaggaaccgaccggtggtaatgacgccctc    at     ag   ggg
        atgtatccgaatgtgtgtcatgtga           tggaaaccatattcttttaagaaactcaagcgcttgttctttagt                aca
                    X                                                                                      *

Query   GR---
        ||   
Target  GRRIA
        gaaag
        gggtc
        ggact
             
------- positions -------
Exon 1    9318289      9318363
Exon 2    9318152      9318287
Exon 3    9257350      9257372

-------- features -------
None
--------- 3' seq --------
Total sequence length available downstream >= 6000
Sequence until first stop codon: 
TGA
 *