Command line: [exonerate -m p2g --showtargetgff -q SelK_1.fa.U_to_X -t gi|511782563|gb|CM001943.1|.fastasubseq]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00001340_2.0 # Protein # Selenoprotein K (SelK) # Macaque (Macaca mulatta) 
        Target: gi|511782563|gb|CM001943.1|:subseq(18972550,200236) Chlorocebus sabaeus isolate 1994-021 chromosome 3, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 438
   Query range: 0 -> 93
  Target range: 100236 -> 99957

      1 : MetValTyrValSerAsnGlyGlnValLeuAspSerGlnSerGlnSerProTrpArgL :     20
          |||||||||:!!||||||||||||||||||||||||||||||||||||||||||||||
          MetValTyrIleSerAsnGlyGlnValLeuAspSerGlnSerGlnSerProTrpArgL
 100236 : ATGGTTTACATCTCAAACGGACAAGTGTTGGACAGCCAGAGTCAGTCTCCATGGAGAT : 100179

     21 : euSerLeuIleThrAspPhePheTrpGlyIleAlaLysPheGluValLeuPhePheLy :     39
          |||||||||||||||||||||||! !|||||||||:!!|||  !||||||||||||||
          euSerLeuIleThrAspPhePheSerGlyIleAlaGlnPheMetValLeuPhePheLy
 100178 : TATCTTTGATAACAGATTTCTTCTCGGGAATAGCCCAGTTTATGGTTTTGTTTTTCAA : 100122

     40 : sThrLeuLeuGlnGlnAspValLysLysArgSerTyrGlyAsnSerSerAspSerArg :     58
          ||||||||||||||||||||||||||||||||||||| !!||||||||||||||||||
          sThrLeuLeuGlnGlnAspValLysLysArgSerTyrArgAsnSerSerAspSerArg
 100121 : AACTCTGCTTCAGCAAGATGTGAAAAAAAGAAGCTATAGAAACTCATCTGATTCCAGA : 100065

     59 : TyrAsnAspGlyArgGlyProProGlyAsnProProGlnArgMetGlyArgIleAsnH :     78
          |||||||||||||||||||||||| !!|||||| !!||||||||||||||||||||||
          TyrAsnAspGlyArgGlyProProArgAsnProThrGlnArgMetGlyArgIleAsnH
 100064 : TACAATGATGGAAGAGGGCCACCCCGAAACCCTACCCAAAGAATGGGTAGAATCAATC : 100005

     79 : isLeuHisGlyProSerProProProValAlaGlyGlyUnkGlyArg :     93
          |||||!.!||||||||||||||||||||||||||||||   ||||||
          isLeuArgGlyProSerProProProValAlaGlyGly***GlyArg
 100004 : ATCTGCGTGGCCCCAGTCCTCCTCCAGTGGCTGGTGGATGAGGAAGG :  99958

vulgar: SPP00001340_2.0 0 93 . gi|511782563|gb|CM001943.1|:subseq(18972550,200236) 100236 99957 - 438 M 93 279
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-05
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|511782563|gb|CM001943.1|:subseq(18972550,200236)	exonerate:protein2genome:local	gene	99958	100236	438	-	.	gene_id 1 ; sequence SPP00001340_2.0 ; gene_orientation .
gi|511782563|gb|CM001943.1|:subseq(18972550,200236)	exonerate:protein2genome:local	cds	99958	100236	.	-	.	
gi|511782563|gb|CM001943.1|:subseq(18972550,200236)	exonerate:protein2genome:local	exon	99958	100236	.	-	.	insertions 0 ; deletions 0
gi|511782563|gb|CM001943.1|:subseq(18972550,200236)	exonerate:protein2genome:local	similarity	99958	100236	438	-	.	alignment_id 1 ; Query SPP00001340_2.0 ; Align 100237 1 279
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis