Command line: [exonerate -m p2g --showtargetgff -q SelH.fa.U_to_X -t gi|511782591|gb|CM001941.1|.fastasubseq]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000070_2.0 # Protein # Selenoprotein H (SelH) # Human (Homo sapiens) 
        Target: gi|511782591|gb|CM001941.1|:subseq(15438251,100101) Chlorocebus sabaeus isolate 1994-021 chromosome 1, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 583
   Query range: 0 -> 122
  Target range: 50597 -> 49999

     1 : MetAlaProArgGlyArgLysArgLysAlaGluAlaAlaValValAlaValAlaGluLys :    20
         |||||||||||||||||||||||||||||||||||||||:!!||||||!.!|||||||||
         MetAlaProArgGlyArgLysArgLysAlaGluAlaAlaMetValAlaAlaAlaGluLys
 50597 : ATGGCTCCCCGCGGTAGGAAGCGGAAGGCTGAGGCCGCGATGGTCGCCGCAGCCGAGAAG : 50540

    21 : ArgGluLysLeuAlaAsnGlyGlyGluGlyMetGluGluAlaThrValValIleGluHis :    40
         ||||||||||||||||||.!!|||||||||||||||||||||||||||||||||||||||
         ArgGluLysLeuAlaAsnSerGlyGluGlyMetGluGluAlaThrValValIleGluHis
 50539 : CGAGAGAAGCTGGCAAACAGCGGGGAGGGAATGGAGGAGGCAACCGTTGTTATCGAGCAT : 50480

    41 : {Cy}  >>>> Target Intron 1 >>>>  {s}ThrSerUnkArgValTyrGlyArg :    49
         {||}            89 bp            {|}||||||   |||||||||||||||
         {Cy}++                         ++{s}ThrSer***ArgValTyrGlyArg
 50479 : {TG}gt.........................ag{C}ACGAGCTGACGCGTCTATGGGCGC : 50364

    50 : AsnAlaAlaAlaLeuSerGlnAlaLeuArgLeuGluAlaProGluLeuProValLysVal :    69
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         AsnAlaAlaAlaLeuSerGlnAlaLeuArgLeuGluAlaProGluLeuProValLysVal
 50363 : AACGCCGCGGCCCTGAGTCAGGCGCTGCGCCTGGAGGCCCCAGAGCTTCCAGTAAAGGTG : 50304

    70 : AsnProThrLysProArgArgGlySerPheGluValThrLeuLeuArgProAspGlySer :    89
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         AsnProThrLysProArgArgGlySerPheGluValThrLeuLeuArgProAspGlySer
 50303 : AACCCGACCAAGCCCCGGAGGGGCAGCTTCGAAGTGACGCTGCTGCGCCCGGACGGCAGC : 50244

    90 : {S}  >>>> Target Intron 2 >>>>  {er}AlaGluLeuTrpThrGlyIleLys :    98
         {|}            143 bp           {||}||||||||||||||||||||||||
         {S}++                         ++{er}AlaGluLeuTrpThrGlyIleLys
 50243 : {A}gt.........................ag{GT}GCGGAGCTCTGGACTGGGATTAAG : 50074

    99 : LysGlyProProArgLysLeuLysPheProGluProGlnGluValValGluGluLeuLys :   118
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         LysGlyProProArgLysLeuLysPheProGluProGlnGluValValGluGluLeuLys
 50073 : AAGGGGCCCCCACGCAAACTCAAATTCCCTGAGCCTCAGGAGGTGGTGGAAGAGTTGAAG : 50014

   119 : LysTyrLeuSer :   122
         ||||||||||||
         LysTyrLeuSer
 50013 : AAGTACCTGTCG : 50000

vulgar: SPP00000070_2.0 0 122 . gi|511782591|gb|CM001941.1|:subseq(15438251,100101) 50597 49999 - 583 M 40 120 S 0 2 5 0 2 I 0 85 3 0 2 S 1 1 M 48 144 S 0 1 5 0 2 I 0 139 3 0 2 S 1 2 M 32 96
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-04
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|511782591|gb|CM001941.1|:subseq(15438251,100101)	exonerate:protein2genome:local	gene	50000	50597	583	-	.	gene_id 1 ; sequence SPP00000070_2.0 ; gene_orientation +
gi|511782591|gb|CM001941.1|:subseq(15438251,100101)	exonerate:protein2genome:local	cds	50476	50597	.	-	.	
gi|511782591|gb|CM001941.1|:subseq(15438251,100101)	exonerate:protein2genome:local	exon	50476	50597	.	-	.	insertions 0 ; deletions 0
gi|511782591|gb|CM001941.1|:subseq(15438251,100101)	exonerate:protein2genome:local	splice5	50474	50475	.	-	.	intron_id 1 ; splice_site "GT"
gi|511782591|gb|CM001941.1|:subseq(15438251,100101)	exonerate:protein2genome:local	intron	50387	50475	.	-	.	intron_id 1
gi|511782591|gb|CM001941.1|:subseq(15438251,100101)	exonerate:protein2genome:local	splice3	50387	50388	.	-	.	intron_id 0 ; splice_site "AG"
gi|511782591|gb|CM001941.1|:subseq(15438251,100101)	exonerate:protein2genome:local	cds	50241	50386	.	-	.	
gi|511782591|gb|CM001941.1|:subseq(15438251,100101)	exonerate:protein2genome:local	exon	50241	50386	.	-	.	insertions 0 ; deletions 0
gi|511782591|gb|CM001941.1|:subseq(15438251,100101)	exonerate:protein2genome:local	splice5	50239	50240	.	-	.	intron_id 2 ; splice_site "GT"
gi|511782591|gb|CM001941.1|:subseq(15438251,100101)	exonerate:protein2genome:local	intron	50098	50240	.	-	.	intron_id 2
gi|511782591|gb|CM001941.1|:subseq(15438251,100101)	exonerate:protein2genome:local	splice3	50098	50099	.	-	.	intron_id 1 ; splice_site "AG"
gi|511782591|gb|CM001941.1|:subseq(15438251,100101)	exonerate:protein2genome:local	cds	50000	50097	.	-	.	
gi|511782591|gb|CM001941.1|:subseq(15438251,100101)	exonerate:protein2genome:local	exon	50000	50097	.	-	.	insertions 0 ; deletions 0
gi|511782591|gb|CM001941.1|:subseq(15438251,100101)	exonerate:protein2genome:local	similarity	50000	50597	583	-	.	alignment_id 1 ; Query SPP00000070_2.0 ; Align 50598 1 120 ; Align 50386 42 144 ; Align 50096 91 96
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis