genewise output
Score 18.95 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000070_2.0   38 IEHCTSXRVY                                        
                     + HCT  RVY                                        
                     VSHCTQIRVY                                        
gi|511782591|gb87195 gactacaagt                                        
                     tgagcatgta                                        
                     gccccaaatt                                        


//
>gi|511782591|gb|CM001941.1|:subseq(15438251,100101).pep
VSHCTQIRVY
//
>gi|511782591|gb|CM001941.1|:subseq(15438251,100101).[87195:87224].sp
GTGAGCCACTGCACCCAAATAAGAGTTTAT
//
gi|511782591|gb|CM001941.1|:subseq(15438251,100101)	GeneWise	match	87195	87224	18.95	+	.	gi|511782591|gb|CM001941.1|:subseq(15438251,100101)-genewise-prediction-1
gi|511782591|gb|CM001941.1|:subseq(15438251,100101)	GeneWise	cds	87195	87224	0.00	+	0	gi|511782591|gb|CM001941.1|:subseq(15438251,100101)-genewise-prediction-1
//

genewise output
Score 230.51 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000070_2.0    1 MAPRGRKRKAEAAVVAVAEKREKLANGGEGMEEATVVIEH          
                     MAPRGRKRKAEAA+VA AEKREKLAN GEGMEEATVVIEH          
                     MAPRGRKRKAEAAMVAAAEKREKLANSGEGMEEATVVIEH          
gi|511782591|g-50597 agccgaacaggggagggggacgacgaagggagggaggagc          
                     tccgggagacaccttcccaagaatcaggagtaacctttaa          
                     gtcctggggtgcggccacggagggaccggagggacttcgt          


SPP00000070_2.0   41                           TSXRVYGRNAAALSQALRLEAPE 
                                               TSXRVYGRNAAALSQALRLEAPE 
                                C:C[tgc]       TSXRVYGRNAAALSQALRLEAPE 
gi|511782591|g-50477 TGGTGAGGG  Intron 1   TAGCaatcgtgcagggcacgcccggcg 
                       <2-----[50475:50387]-2> cgggtaggaccctgactgtacca 
                                               gcacctgcccgcgtgggcggcag 


SPP00000070_2.0   65 LPVKVNPTKPRRGSFEVTLLRPDGS                         
                     LPVKVNPTKPRRGSFEVTLLRPDGS                         
                     LPVKVNPTKPRRGSFEVTLLRPDGS          S:S[agt]       
gi|511782591|g-50316 ccgagacaaccagatggaccccggaAGTAAGTG  Intron 2       
                     tctataccacggggtatcttgcagg <1-----[50240:50098]    
                     taaggcgcgcggcccaggggcgccc                         


SPP00000070_2.0   90      AELWTGIKKGPPRKLKFPEPQEVVEELKKYLS             
                          AELWTGIKKGPPRKLKFPEPQEVVEELKKYLS             
                          AELWTGIKKGPPRKLKFPEPQEVVEELKKYLS             
gi|511782591|g-50100 CAGGTggctagaaagcccacatcgccgggggtaatct             
                     -1>  catgcgtaagccgatatcacaattaataaatc             
                          ggcgtgtgggcacacactgtggggaggggcgg             


//
Making a C in phase 2 intron
Making a S in phase 1 intron
>gi|511782591|gb|CM001941.1|:subseq(15438251,100101).pep
MAPRGRKRKAEAAMVAAAEKREKLANSGEGMEEATVVIEHCTSXRVYGRNAAALSQALRL
EAPELPVKVNPTKPRRGSFEVTLLRPDGSSAELWTGIKKGPPRKLKFPEPQEVVEELKKY
LS
//
>gi|511782591|gb|CM001941.1|:subseq(15438251,100101).[50597:49998].sp
ATGGCTCCCCGCGGTAGGAAGCGGAAGGCTGAGGCCGCGATGGTCGCCGCAGCCGAGAAG
CGAGAGAAGCTGGCAAACAGCGGGGAGGGAATGGAGGAGGCAACCGTTGTTATCGAGCAT
TGCACGAGCTGACGCGTCTATGGGCGCAACGCCGCGGCCCTGAGTCAGGCGCTGCGCCTG
GAGGCCCCAGAGCTTCCAGTAAAGGTGAACCCGACCAAGCCCCGGAGGGGCAGCTTCGAA
GTGACGCTGCTGCGCCCGGACGGCAGCAGTGCGGAGCTCTGGACTGGGATTAAGAAGGGG
CCCCCACGCAAACTCAAATTCCCTGAGCCTCAGGAGGTGGTGGAAGAGTTGAAGAAGTAC
CTGTCG
//
gi|511782591|gb|CM001941.1|:subseq(15438251,100101)	GeneWise	match	50597	50000	230.51	-	.	gi|511782591|gb|CM001941.1|:subseq(15438251,100101)-genewise-prediction-1
gi|511782591|gb|CM001941.1|:subseq(15438251,100101)	GeneWise	cds	50597	50476	0.00	-	0	gi|511782591|gb|CM001941.1|:subseq(15438251,100101)-genewise-prediction-1
gi|511782591|gb|CM001941.1|:subseq(15438251,100101)	GeneWise	intron	50475	50387	0.00	-	.	gi|511782591|gb|CM001941.1|:subseq(15438251,100101)-genewise-prediction-1
gi|511782591|gb|CM001941.1|:subseq(15438251,100101)	GeneWise	cds	50386	50241	0.00	-	1	gi|511782591|gb|CM001941.1|:subseq(15438251,100101)-genewise-prediction-1
gi|511782591|gb|CM001941.1|:subseq(15438251,100101)	GeneWise	intron	50240	50098	0.00	-	.	gi|511782591|gb|CM001941.1|:subseq(15438251,100101)-genewise-prediction-1
gi|511782591|gb|CM001941.1|:subseq(15438251,100101)	GeneWise	cds	50097	50000	0.00	-	2	gi|511782591|gb|CM001941.1|:subseq(15438251,100101)-genewise-prediction-1
//