_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
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 Blastx evalue: 1e-24
 Query name: gi|316983162|ref|NP_001186914.1| selenoprotein H [Pongo abelii]
 Query range: 1-122  (total 122)

 Target: /var/www/seblastian_output/474999837/tempfiles/temptarget.fasta
 Chromosome: gi|511782591|gb|CM001941.1|subseq(15438251,100101) Strand: -
 Positions:
 -Exon 1  50476        50597
 -Exon 2  50241        50386
 -Exon 3  50000        50097

 Redox box: YES

Query   MAPRGRKRKAEAAVVAVAEKREKLTNGGEGMEEATVVIEHC <---Intron---> TSURVYGRNAAALSQALRLEAPELPVKVNPTKPRRGSFEVTLL
        |||||||||||||/|| ||||||| | |||||||||||||| <    89bp    > |||||||||||||||||||||||||||||||||||||||||||
Target  MAPRGRKRKAEAAMVAAAEKREKLANSGEGMEEATVVIEHC                TSURVYGRNAAALSQALRLEAPELPVKVNPTKPRRGSFEVTLL
        agccgaacaggggagggggacgacgaagggagggaggagct                aatcgtgcagggcacgcccggcgccgagacaaccagatggacc
        tccgggagacaccttcccaagaatcaggagtaacctttaag                cgggtaggaccctgactgtaccatctataccacggggtatctt
        gtcctggggtgcggccacggagggaccggagggacttcgt                cgcacctgcccgcgtgggcggcagtaaggcgcgcggcccagggg
                                                                   *                                        

Query   RPDGSS <---Intron---> AELWTGIKKGPPRKLKFPEPQEVVEELKKYLS
        |||||| <   143bp    > ||||||||||||||||||||||||||||||||
Target  RPDGSS                AELWTGIKKGPPRKLKFPEPQEVVEELKKYLS
        ccggaa                ggctagaaagcccacatcgccgggggtaatct
        gcaggg                catgcgtaagccgatatcacaattaataaatc
        cgccc                tggcgtgtgggcacacactgtggggaggggcgg
                                                              
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 664 ; UGA-SECIS: 898

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = gi|511782591|gb|CM001941.1|subseq(15438251,100101) Strand = - Positions = 49335 - 49268
 Found by:  Infernal (score=27.8) Covels (score=26.97)
 Stem2 length = 10   Apical loop length = 9   Insertion in stem2 = 0, 0
 Free Energy = -11.92

         ..(((((((.......(((((((((((((((...............)))))))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         ...(((({(---....([[{(([(((((((......--------...)))))))]))}]])......-...)}))))...
 target  GUUGGAACA---UUAAUGAUGGAACAUGGCCAAACU--------UCAGUCAUGUGCCUGAAGCCAUG-GUUUCUUCCCCG
                         ****           ^^^                       ****