Output_id:  Sel15.3.selenocysteine
----------  ----------------------
-Species        Chlorocebus sabaeus                          -Taxid 60711
-Target         /home/U73970/luke/Selenoprofiles/selenoprofiles_3_installation/genome_linked/genome.fa
-Chromosome (+) gi|511782573|gb|CM001961.1|
-Program        genewise
-Query name     gi|144953871|ref|NP_001029931.2| 15 kDa selenoprotein [Bos taurus] gi|172048656|sp|A8YXY3.2|SEP15_BOVIN RecName: Full=15 kDa selenoprotein_ Flags: Precursor gi|158454994|gb|AAI02887.1| 15 kDa selenoprotein [Bos taurus]
-Query range    1-162      length:162   coverage: 1.0
-Profile range  4-178      length:209   coverage: 0.84    sec_position: [104]
-ASI:           0.449     (ignoring gaps: 0.4705)
-AWSIc:         0.7242     Z-score: 0.847
-AWSIw:         0.7295     Z-score: 0.873
-State          kept

------- alignment -------
Query   MAARRDGWLGPAFGLRLLLATVLQT <---Intron---> VSALGAEFSSESCRELGFSSNLLCSSCDLLGQFNLLQLDPDCRGCCQEEAQFETKK <-
        |||   ||| | ||||||||||||  <  10690nt   > ||| |||||||/|||||||||||||||||||||||||||||||||||||||||||| < 
Target  MAAGLSGWLVPTFGLRLLLATVLQA                VSAFGAEFSSEACRELGFSSNLLCSSCDLLGQFNLLQLDPDCRGCCQEEAQFETKK   
        agggcagtcgcatgcctttgagccg                gtgtgggtttggtagtgttaatctattgccgctaccccgcgtagttcgggctgaaa   
        tccgtgggttcctgtgtttccttac   gt     ag    tcctgcatccacggatgtcgattggcgattgatattatacagggggaaacatacaa   
        gttggtggggggtgagggggtgtag                ttttgagtaagacagacttccgcccttttcagccgtggtttcaactggaaatacag   
                                                                                                            

Query   --Intron---> LYAGAILEVCGUKLGRFPQVQA <---Intron---> FVRSDKPKLFKGLQIK <---Intron---> YVRGSDPVLKLLDDSGN
         20362nt   > |||||||||||||||||||||| <  12283nt   > ||||||||||/||||| <   4669nt   > ||||||||||||||/||
Target               LYAGAILEVCGUKLGRFPQVQA                FVRSDKPKLFRGLQIK                YVRGSDPVLKLLDDNGN
                     ctgggacggtgtatgatccgcg                tgaagacattagccaa                tgcgtgcgtactggaga
        gt     ag    tacgcttatgggatggtcata    gt     ag   cttggaacattggtata   gt     ag    atggcacttattaaaga
                     gtaatttattaaagagctaca                tctgttacagcaaaacg                tcttactaagtgtctgc
                                *                                                                           

Query   IAEELSILKWNTDSVEEFLSEKLERI
        ||||||||||||||||||||||||||
Target  IAEELSILKWNTDSVEEFLSEKLERI
        agggcaacataagagggtcagatgca
        tcaatgttagacagtaattgaatagt
        ttaaactcagcactaaacgtaggaca
                                  
------- positions -------
Exon 1    46546924     46546998
Exon 2    46557689     46557856
Exon 3    46578219     46578282
Exon 4    46590566     46590615
Exon 5    46595285     46595413

-------- features -------
None
--------- 3' seq --------
Total sequence length available downstream >= 6000
Sequence until first stop codon: 
TAA
 *