Command line: [exonerate -m p2g --showtargetgff -q Sel15.fa.U_to_X -t gi|511782573|gb|CM001961.1|.fastasubseq]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00001339_2.0 # Protein # 15 kDa selenoprotein (Sel15) # Macaque (Macaca mulatta) 
        Target: gi|511782573|gb|CM001961.1|:subseq(46446924,248489) Chlorocebus sabaeus isolate 1994-021 chromosome 20, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 795
   Query range: 0 -> 162
  Target range: 99999 -> 148489

      1 : MetAlaAlaGlyLeuSerGlyTrpLeuValProThrPheGlyLeuArgLeuLeuLeuA :     20
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          MetAlaAlaGlyLeuSerGlyTrpLeuValProThrPheGlyLeuArgLeuLeuLeuA
 100000 : ATGGCTGCTGGGCTGAGTGGGTGGCTGGTGCCGACGTTTGGGCTACGGTTGTTGTTGG : 100057

     21 : laThrValLeuGlnAla  >>>> Target Intron 1 >>>>  ValSerAlaPhe :     29
          |||||||||||||||||           10690 bp          ||||||||||||
          laThrValLeuGlnAla++                         ++ValSerAlaPhe
 100058 : CGACTGTGCTTCAAGCGgt.........................agGTTTCTGCTTTT : 110774

     30 : GlyAlaGluPheSerSerGluAlaCysArgGluLeuGlyPheSerSerAsnLeuLeuC :     49
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          GlyAlaGluPheSerSerGluAlaCysArgGluLeuGlyPheSerSerAsnLeuLeuC
 110775 : GGGGCAGAGTTTTCATCAGAGGCATGCAGAGAGTTAGGCTTTTCTAGCAACTTGCTCT : 110834

     50 : ysSerSerCysAspLeuLeuGlyGlnPheAsnLeuLeuGlnLeuAspProAspCysAr :     68
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          ysSerSerCysAspLeuLeuGlyGlnPheAsnLeuLeuGlnLeuAspProAspCysAr
 110835 : GCAGCTCTTGTGATCTTCTCGGACAGTTCAACCTGCTTCAGCTGGATCCTGATTGCAG : 110891

     69 : gGlyCysCysGlnGluGluAlaGlnPheGluThrLysLys  >>>> Target Intr :     82
          ||||||||||||||||||||||||||||||||||||||||           20362 b
          gGlyCysCysGlnGluGluAlaGlnPheGluThrLysLys++                
 110892 : AGGATGCTGTCAGGAGGAAGCACAATTTGAAACCAAAAAGgt................ : 110935

     83 : on 2 >>>>  LeuTyrAlaGlyAlaIleLeuGluValCysGlyUnkLysLeuGlyAr :     97
          p          |||||||||||||||||||||||||||||||||   |||||||||||
                   ++LeuTyrAlaGlyAlaIleLeuGluValCysGly***LysLeuGlyAr
 110936 : .........agCTGTATGCAGGAGCTATTCTTGAAGTTTGTGGATGAAAATTGGGAAG : 131340

     98 : gPheProGlnValGln{A}  >>>> Target Intron 3 >>>>  {la}PheVal :    105
          ||||||||||||||||{|}           12283 bp          {||}||||||
          gPheProGlnValGln{A}++                         ++{la}PheVal
 131341 : GTTCCCTCAAGTCCAA{G}gt.........................ag{CT}TTCGTT : 143647

    106 : ArgSerAspLysProLysLeuPheArgGlyLeuGlnIleLys  >>>> Target In :    120
          ||||||||||||||||||||||||||||||||||||||||||           4669 
          ArgSerAspLysProLysLeuPheArgGlyLeuGlnIleLys++              
 143648 : AGGAGTGATAAACCCAAATTGTTCAGAGGACTACAAATCAAGgt.............. : 143694

    121 : tron 4 >>>>  TyrValArgGlySerAspProIleLeuLysLeuLeuAspAspAsn :    134
          bp           |||||||||||||||||||||:!!|||||||||||||||||||||
                     ++TyrValArgGlySerAspProValLeuLysLeuLeuAspAspAsn
 143695 : ...........agTATGTCCGTGGTTCAGACCCTGTATTAAAGCTTTTGGATGACAAT : 148403

    135 : GlyAsnIleAlaGluGluLeuSerIleLeuLysTrpAsnThrAspSerValGluGluP :    154
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          GlyAsnIleAlaGluGluLeuSerIleLeuLysTrpAsnThrAspSerValGluGluP
 148404 : GGGAACATTGCTGAAGAACTAAGCATTCTCAAATGGAACACAGACAGTGTAGAAGAAT : 148463

    155 : heLeuSerGluLysLeuGluArgIle :    162
          ||||||||||||||||||||||||||
          heLeuSerGluLysLeuGluArgIle
 148464 : TCCTGAGTGAAAAGTTGGAACGCATA : 148489

vulgar: SPP00001339_2.0 0 162 . gi|511782573|gb|CM001961.1|:subseq(46446924,248489) 99999 148489 + 795 M 25 75 5 0 2 I 0 10686 3 0 2 M 56 168 5 0 2 I 0 20358 3 0 2 M 21 63 S 0 1 5 0 2 I 0 12279 3 0 2 S 1 2 M 16 48 5 0 2 I 0 4665 3 0 2 M 43 129
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-05
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|511782573|gb|CM001961.1|:subseq(46446924,248489)	exonerate:protein2genome:local	gene	100000	148489	795	+	.	gene_id 1 ; sequence SPP00001339_2.0 ; gene_orientation +
gi|511782573|gb|CM001961.1|:subseq(46446924,248489)	exonerate:protein2genome:local	cds	100000	100074	.	+	.	
gi|511782573|gb|CM001961.1|:subseq(46446924,248489)	exonerate:protein2genome:local	exon	100000	100074	.	+	.	insertions 0 ; deletions 0
gi|511782573|gb|CM001961.1|:subseq(46446924,248489)	exonerate:protein2genome:local	splice5	100075	100076	.	+	.	intron_id 1 ; splice_site "GT"
gi|511782573|gb|CM001961.1|:subseq(46446924,248489)	exonerate:protein2genome:local	intron	100075	110764	.	+	.	intron_id 1
gi|511782573|gb|CM001961.1|:subseq(46446924,248489)	exonerate:protein2genome:local	splice3	110763	110764	.	+	.	intron_id 0 ; splice_site "AG"
gi|511782573|gb|CM001961.1|:subseq(46446924,248489)	exonerate:protein2genome:local	cds	110765	110932	.	+	.	
gi|511782573|gb|CM001961.1|:subseq(46446924,248489)	exonerate:protein2genome:local	exon	110765	110932	.	+	.	insertions 0 ; deletions 0
gi|511782573|gb|CM001961.1|:subseq(46446924,248489)	exonerate:protein2genome:local	splice5	110933	110934	.	+	.	intron_id 2 ; splice_site "GT"
gi|511782573|gb|CM001961.1|:subseq(46446924,248489)	exonerate:protein2genome:local	intron	110933	131294	.	+	.	intron_id 2
gi|511782573|gb|CM001961.1|:subseq(46446924,248489)	exonerate:protein2genome:local	splice3	131293	131294	.	+	.	intron_id 1 ; splice_site "AG"
gi|511782573|gb|CM001961.1|:subseq(46446924,248489)	exonerate:protein2genome:local	cds	131295	131358	.	+	.	
gi|511782573|gb|CM001961.1|:subseq(46446924,248489)	exonerate:protein2genome:local	exon	131295	131358	.	+	.	insertions 0 ; deletions 0
gi|511782573|gb|CM001961.1|:subseq(46446924,248489)	exonerate:protein2genome:local	splice5	131359	131360	.	+	.	intron_id 3 ; splice_site "GT"
gi|511782573|gb|CM001961.1|:subseq(46446924,248489)	exonerate:protein2genome:local	intron	131359	143641	.	+	.	intron_id 3
gi|511782573|gb|CM001961.1|:subseq(46446924,248489)	exonerate:protein2genome:local	splice3	143640	143641	.	+	.	intron_id 2 ; splice_site "AG"
gi|511782573|gb|CM001961.1|:subseq(46446924,248489)	exonerate:protein2genome:local	cds	143642	143691	.	+	.	
gi|511782573|gb|CM001961.1|:subseq(46446924,248489)	exonerate:protein2genome:local	exon	143642	143691	.	+	.	insertions 0 ; deletions 0
gi|511782573|gb|CM001961.1|:subseq(46446924,248489)	exonerate:protein2genome:local	splice5	143692	143693	.	+	.	intron_id 4 ; splice_site "GT"
gi|511782573|gb|CM001961.1|:subseq(46446924,248489)	exonerate:protein2genome:local	intron	143692	148360	.	+	.	intron_id 4
gi|511782573|gb|CM001961.1|:subseq(46446924,248489)	exonerate:protein2genome:local	splice3	148359	148360	.	+	.	intron_id 3 ; splice_site "AG"
gi|511782573|gb|CM001961.1|:subseq(46446924,248489)	exonerate:protein2genome:local	cds	148361	148489	.	+	.	
gi|511782573|gb|CM001961.1|:subseq(46446924,248489)	exonerate:protein2genome:local	exon	148361	148489	.	+	.	insertions 0 ; deletions 0
gi|511782573|gb|CM001961.1|:subseq(46446924,248489)	exonerate:protein2genome:local	similarity	100000	148489	795	+	.	alignment_id 1 ; Query SPP00001339_2.0 ; Align 100000 1 75 ; Align 110765 26 168 ; Align 131295 82 63 ; Align 143644 104 48 ; Align 148361 120 129
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis