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_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 3e-18
 Query name: gi|111494225|ref|NP_579831.2| 15 kDa selenoprotein precursor [Rattus norvegicus] >gi|172045837|sp|Q923V8.3|SEP15_RAT RecName: Full=15 kDa selenoprotein; Flags: Precursor >gi|38014585|gb|AAH60547.1| Selenoprotein [Rattus norvegicus]
 Query range: 82-162  (total 162)

 Target: /var/www/seblastian_output/928746875/tempfiles/temptarget.fasta
 Chromosome: gi|511782573|gb|CM001961.1| Strand: +
 Positions:
 -Exon 1  131295       131358
 -Exon 2  143642       143691
 -Exon 3  148361       148489

 Redox box: no

Query   LYAGAILEVCGUKLGRFPQVQA <---Intron---> FVRSDKPKLFRGLQIKY <---Intron---> VRGSDPVLKLLDDNGNIAEELSILKWNTD
        |||||||||||||||||||||| <  12283bp   > ||||||||||||||||| <   4669bp   > |||||||||||||||||||||||||||||
Target  LYAGAILEVCGUKLGRFPQVQA                FVRSDKPKLFRGLQIKY                VRGSDPVLKLLDDNGNIAEELSILKWNTD
        ctgggacggtgtatgatccgcg                tgaagacattagccaat                gcgtgcgtactggagaagggcaacataag
        tacgcttatgggatggtcata                cttggaacattggtataa                tggcacttattaaagatcaatgttagaca
        gtaatttattaaagagctaca                tctgttacagcaaaacg                tcttactaagtgtctgcttaaactcagcac
                   *                                                                                        

Query   SVEEFLSEKLERI
        |||||||||||||
Target  SVEEFLSEKLERI
        agggtcagatgca
        gtaattgaatagt
        taaacgtaggaca
                     
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 592 ; UGA-SECIS: 799

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = gi|511782573|gb|CM001961.1| Strand = + Positions = 149082 - 149163
 Found by:  Infernal (score=32.71) Covels (score=27.71)
 Stem2 length = 11   Apical loop length = 15   Insertion in stem2 = 0, 1
 Free Energy = -16.2

         ..(((((((.......(((((((((((((((...............))))))))).))))))............)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccagg-cCuGAUGuu---u-uuucaugaccggc
         (((((((((((.....{[[{(((((((((((...............))))))))).))}]]}........-.)))))))))))
 target  CAAAGAUUUGCGUUAAUGAAGACUACACAGAAAACCUUCCUAAGGAUUUGUGUGGAUCAGAUACAUACUU-GGCAAAUUUUUG
                         ****           ^^^                        ****