Command line: [exonerate -m p2g --showtargetgff -q SecP43.fa.U_to_X -t gi|511782573|gb|CM001961.1|.fastasubseq]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000146_2.0 # Protein # tRNA Sec 1 associated protein 1 (SECp43) # Human (Homo sapiens) 
        Target: gi|511782573|gb|CM001961.1|:subseq(104115074,223959) Chlorocebus sabaeus isolate 1994-021 chromosome 20, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 1491
   Query range: 0 -> 287
  Target range: 124487 -> 99999

      1 : MetAlaAlaSerLeuTrpMetGlyAsp  >>>> Target Intron 1 >>>>  Le :     10
          |||||||||||||||||||||||||||            501 bp           ||
          MetAlaAlaSerLeuTrpMetGlyAsp++                         ++Le
 124487 : ATGGCGGCCAGCCTGTGGATGGGCGACgt.........................agCT : 123959

     11 : uGluProTyrMetAspGluAsnPheIleSerArgAlaPheAlaThrMetGlyGluThr :     29
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          uGluProTyrMetAspGluAsnPheIleSerArgAlaPheAlaThrMetGlyGluThr
 123958 : GGAACCCTACATGGATGAGAACTTCATCTCCAGAGCTTTTGCCACCATGGGGGAGACG : 123902

     30 : ValMetSerValLysIleIleArgAsnArgLeuThr{Gl}  >>>> Target Intr :     42
          ||||||||||||||||||||||||||||||||||||{||}           2920 bp
          ValMetSerValLysIleIleArgAsnArgLeuThr{Gl}++                
 123901 : GTAATGAGCGTCAAAATTATCCGAAACCGCCTCACT{GG}gt................ : 123859

     43 : on 2 >>>>  {y}IleProAlaGlyTyrCysPheValGluPheAlaAspLeuAlaTh :     57
                     {|}||||||||||||||||||||||||||||||||||||||||||||
                   ++{y}IleProAlaGlyTyrCysPheValGluPheAlaAspLeuAlaTh
 123858 : .........ag{G}ATCCCAGCTGGCTACTGCTTTGTAGAATTCGCAGATTTGGCCAC : 120898

     58 : rAlaGluLysCysLeuHisLysIleAsnGlyLysProLeuProGlyAlaThrPro  > :     76
          |||||||||||||||||||||||||||||||||||||||||||||||||||||||   
          rAlaGluLysCysLeuHisLysIleAsnGlyLysProLeuProGlyAlaThrPro++ 
 120897 : TGCTGAGAAGTGTTTGCATAAAATTAATGGGAAACCCCTTCCAGGAGCCACACCTgt. : 120839

     77 : >>> Target Intron 3 >>>>  AlaLysArgPheLysLeuAsnTyrAlaThrTy :     86
                   613 bp           ||||||||||||||||||||||||||||||||
                                  ++AlaLysArgPheLysLeuAsnTyrAlaThrTy
 120838 : ........................agGCGAAACGTTTTAAACTGAACTATGCCACTTA : 120198

     87 : rGlyLysGlnProAspAsn{Se}  >>>> Target Intron 4 >>>>  {r}Pro :     94
          |||||||||||||||||||{||}           5253 bp           {|}|||
          rGlyLysGlnProAspAsn{Se}++                         ++{r}Pro
 120197 : TGGGAAACAACCAGATAAC{AG}gt.........................ag{C}CCT : 114921

     95 : GluTyrSerLeuPheValGlyAspLeuThrProAspValAspAspGlyMetLeuTyrG :    114
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          GluTyrSerLeuPheValGlyAspLeuThrProAspValAspAspGlyMetLeuTyrG
 114920 : GAGTATTCCCTCTTTGTGGGGGACCTGACCCCAGACGTGGATGATGGCATGCTGTATG : 114861

    115 : luPhePheValLysValTyrProSerCysArgGlyGlyLysValValLeuAspGlnTh :    133
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          luPhePheValLysValTyrProSerCysArgGlyGlyLysValValLeuAspGlnTh
 114860 : AATTCTTCGTCAAAGTCTACCCCTCCTGTCGGGGAGGCAAGGTGGTTTTGGACCAGAC : 114804

    134 : rGlyValSer{Ly}  >>>> Target Intron 5 >>>>  {s}GlyTyrGlyPhe :    141
          ||||||||||{||}           2940 bp           {|}||||||||||||
          rGlyValSer{Ly}++                         ++{s}GlyTyrGlyPhe
 114803 : AGGCGTGTCT{AA}gt.........................ag{G}GGTTATGGTTTT : 111840

    142 : ValLysPheThrAspGluLeuGluGlnLysArgAlaLeuThrGluCysGlnGlyAlaV :    161
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          ValLysPheThrAspGluLeuGluGlnLysArgAlaLeuThrGluCysGlnGlyAlaV
 111839 : GTGAAATTCACAGATGAACTGGAACAGAAGCGAGCCCTGACGGAGTGCCAGGGAGCAG : 111780

    162 : alGlyLeuGlySerLysProValArgLeuSerValAlaIleProLys{Al}  >>>>  :    177
          |||||||||||:!!|||||||||||||||||||||||||||||||||{||}       
          alGlyLeuGlyAlaLysProValArgLeuSerValAlaIleProLys{Al}++     
 111779 : TGGGACTGGGGGCTAAGCCTGTGCGGCTGAGCGTGGCAATCCCTAAA{GC}gt..... : 111728

    178 : Target Intron 6 >>>>  {a}SerArgValLysProValGluTyrSerGlnMet :    188
              3766 bp           {|}|||||||||||||||||||||||||||||||||
                              ++{a}SerArgValLysProValGluTyrSerGlnMet
 111727 : ....................ag{G}AGCCGTGTAAAGCCAGTGGAATATAGTCAGATG : 107933

    189 : TyrSerTyrSerTyrAsnGlnTyrTyrGlnGlnTyrGlnAsnTyrTyrAlaGlnTrpG :    208
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          TyrSerTyrSerTyrAsnGlnTyrTyrGlnGlnTyrGlnAsnTyrTyrAlaGlnTrpG
 107932 : TACAGTTACAGCTACAACCAGTATTATCAGCAGTACCAGAACTACTATGCTCAGTGGG : 107873

    209 : lyTyrAspGlnAsnThrGlySerTyrSerTyrSerTyrProGlnTyrGlyTyrThrGl :    227
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          lyTyrAspGlnAsnThrGlySerTyrSerTyrSerTyrProGlnTyrGlyTyrThrGl
 107872 : GCTATGACCAGAACACAGGCAGCTACAGCTACAGTTACCCCCAGTATGGCTATACCCA : 107816

    228 : nSerThrMetGln  >>>> Target Intron 7 >>>>  ThrTyrGluGluValG :    237
          |||||||||||||            538 bp           ||||||||||||||||
          nSerThrMetGln++                         ++ThrTyrGluGluValG
 107815 : GAGCACCATGCAGgt.........................agACATATGAAGAAGTTG : 107248

    238 : lyAspAspAlaLeuGlu{A}  >>>> Target Intron 8 >>>>  {sp}ProMe :    245
          |||||||||||||||||{|}           7096 bp           {||}|||||
          lyAspAspAlaLeuGlu{A}++                         ++{sp}ProMe
 107247 : GAGATGATGCATTGGAA{G}gt.........................ag{AC}CCCAT : 100128

    246 : tProGlnLeuAspValThrGluAlaAsnLysGluPheMetGluGlnSerGluGluLeu :    264
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          tProGlnLeuAspValThrGluAlaAsnLysGluPheMetGluGlnSerGluGluLeu
 100127 : GCCACAGCTGGATGTGACTGAGGCCAACAAAGAATTCATGGAACAGAGTGAGGAGCTG : 100071

    265 : TyrAspAlaLeuMetAspCysHisTrpGlnProLeuAspThrValSerSerGluIleP :    284
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          TyrAspAlaLeuMetAspCysHisTrpGlnProLeuAspThrValSerSerGluIleP
 100070 : TATGATGCTCTGATGGACTGTCACTGGCAGCCCCTGGACACAGTGTCTTCAGAGATCC : 100011

    285 : roAlaMetMet :    287
          |||||||||||
          roAlaMetMet
 100010 : CTGCCATGATG : 100000

vulgar: SPP00000146_2.0 0 287 . gi|511782573|gb|CM001961.1|:subseq(104115074,223959) 124487 99999 - 1491 M 9 27 5 0 2 I 0 497 3 0 2 M 32 96 S 0 2 5 0 2 I 0 2916 3 0 2 S 1 1 M 33 99 5 0 2 I 0 609 3 0 2 M 17 51 S 0 2 5 0 2 I 0 5249 3 0 2 S 1 1 M 43 129 S 0 2 5 0 2 I 0 2936 3 0 2 S 1 1 M 39 117 S 0 2 5 0 2 I 0 3762 3 0 2 S 1 1 M 54 162 5 0 2 I 0 534 3 0 2 M 11 33 S 0 1 5 0 2 I 0 7092 3 0 2 S 1 2 M 44 132
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-06
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|511782573|gb|CM001961.1|:subseq(104115074,223959)	exonerate:protein2genome:local	gene	100000	124487	1491	-	.	gene_id 1 ; sequence SPP00000146_2.0 ; gene_orientation +
gi|511782573|gb|CM001961.1|:subseq(104115074,223959)	exonerate:protein2genome:local	cds	124461	124487	.	-	.	
gi|511782573|gb|CM001961.1|:subseq(104115074,223959)	exonerate:protein2genome:local	exon	124461	124487	.	-	.	insertions 0 ; deletions 0
gi|511782573|gb|CM001961.1|:subseq(104115074,223959)	exonerate:protein2genome:local	splice5	124459	124460	.	-	.	intron_id 1 ; splice_site "GT"
gi|511782573|gb|CM001961.1|:subseq(104115074,223959)	exonerate:protein2genome:local	intron	123960	124460	.	-	.	intron_id 1
gi|511782573|gb|CM001961.1|:subseq(104115074,223959)	exonerate:protein2genome:local	splice3	123960	123961	.	-	.	intron_id 0 ; splice_site "AG"
gi|511782573|gb|CM001961.1|:subseq(104115074,223959)	exonerate:protein2genome:local	cds	123862	123959	.	-	.	
gi|511782573|gb|CM001961.1|:subseq(104115074,223959)	exonerate:protein2genome:local	exon	123862	123959	.	-	.	insertions 0 ; deletions 0
gi|511782573|gb|CM001961.1|:subseq(104115074,223959)	exonerate:protein2genome:local	splice5	123860	123861	.	-	.	intron_id 2 ; splice_site "GT"
gi|511782573|gb|CM001961.1|:subseq(104115074,223959)	exonerate:protein2genome:local	intron	120942	123861	.	-	.	intron_id 2
gi|511782573|gb|CM001961.1|:subseq(104115074,223959)	exonerate:protein2genome:local	splice3	120942	120943	.	-	.	intron_id 1 ; splice_site "AG"
gi|511782573|gb|CM001961.1|:subseq(104115074,223959)	exonerate:protein2genome:local	cds	120842	120941	.	-	.	
gi|511782573|gb|CM001961.1|:subseq(104115074,223959)	exonerate:protein2genome:local	exon	120842	120941	.	-	.	insertions 0 ; deletions 0
gi|511782573|gb|CM001961.1|:subseq(104115074,223959)	exonerate:protein2genome:local	splice5	120840	120841	.	-	.	intron_id 3 ; splice_site "GT"
gi|511782573|gb|CM001961.1|:subseq(104115074,223959)	exonerate:protein2genome:local	intron	120229	120841	.	-	.	intron_id 3
gi|511782573|gb|CM001961.1|:subseq(104115074,223959)	exonerate:protein2genome:local	splice3	120229	120230	.	-	.	intron_id 2 ; splice_site "AG"
gi|511782573|gb|CM001961.1|:subseq(104115074,223959)	exonerate:protein2genome:local	cds	120176	120228	.	-	.	
gi|511782573|gb|CM001961.1|:subseq(104115074,223959)	exonerate:protein2genome:local	exon	120176	120228	.	-	.	insertions 0 ; deletions 0
gi|511782573|gb|CM001961.1|:subseq(104115074,223959)	exonerate:protein2genome:local	splice5	120174	120175	.	-	.	intron_id 4 ; splice_site "GT"
gi|511782573|gb|CM001961.1|:subseq(104115074,223959)	exonerate:protein2genome:local	intron	114923	120175	.	-	.	intron_id 4
gi|511782573|gb|CM001961.1|:subseq(104115074,223959)	exonerate:protein2genome:local	splice3	114923	114924	.	-	.	intron_id 3 ; splice_site "AG"
gi|511782573|gb|CM001961.1|:subseq(104115074,223959)	exonerate:protein2genome:local	cds	114791	114922	.	-	.	
gi|511782573|gb|CM001961.1|:subseq(104115074,223959)	exonerate:protein2genome:local	exon	114791	114922	.	-	.	insertions 0 ; deletions 0
gi|511782573|gb|CM001961.1|:subseq(104115074,223959)	exonerate:protein2genome:local	splice5	114789	114790	.	-	.	intron_id 5 ; splice_site "GT"
gi|511782573|gb|CM001961.1|:subseq(104115074,223959)	exonerate:protein2genome:local	intron	111851	114790	.	-	.	intron_id 5
gi|511782573|gb|CM001961.1|:subseq(104115074,223959)	exonerate:protein2genome:local	splice3	111851	111852	.	-	.	intron_id 4 ; splice_site "AG"
gi|511782573|gb|CM001961.1|:subseq(104115074,223959)	exonerate:protein2genome:local	cds	111731	111850	.	-	.	
gi|511782573|gb|CM001961.1|:subseq(104115074,223959)	exonerate:protein2genome:local	exon	111731	111850	.	-	.	insertions 0 ; deletions 0
gi|511782573|gb|CM001961.1|:subseq(104115074,223959)	exonerate:protein2genome:local	splice5	111729	111730	.	-	.	intron_id 6 ; splice_site "GT"
gi|511782573|gb|CM001961.1|:subseq(104115074,223959)	exonerate:protein2genome:local	intron	107965	111730	.	-	.	intron_id 6
gi|511782573|gb|CM001961.1|:subseq(104115074,223959)	exonerate:protein2genome:local	splice3	107965	107966	.	-	.	intron_id 5 ; splice_site "AG"
gi|511782573|gb|CM001961.1|:subseq(104115074,223959)	exonerate:protein2genome:local	cds	107802	107964	.	-	.	
gi|511782573|gb|CM001961.1|:subseq(104115074,223959)	exonerate:protein2genome:local	exon	107802	107964	.	-	.	insertions 0 ; deletions 0
gi|511782573|gb|CM001961.1|:subseq(104115074,223959)	exonerate:protein2genome:local	splice5	107800	107801	.	-	.	intron_id 7 ; splice_site "GT"
gi|511782573|gb|CM001961.1|:subseq(104115074,223959)	exonerate:protein2genome:local	intron	107264	107801	.	-	.	intron_id 7
gi|511782573|gb|CM001961.1|:subseq(104115074,223959)	exonerate:protein2genome:local	splice3	107264	107265	.	-	.	intron_id 6 ; splice_site "AG"
gi|511782573|gb|CM001961.1|:subseq(104115074,223959)	exonerate:protein2genome:local	cds	107230	107263	.	-	.	
gi|511782573|gb|CM001961.1|:subseq(104115074,223959)	exonerate:protein2genome:local	exon	107230	107263	.	-	.	insertions 0 ; deletions 0
gi|511782573|gb|CM001961.1|:subseq(104115074,223959)	exonerate:protein2genome:local	splice5	107228	107229	.	-	.	intron_id 8 ; splice_site "GT"
gi|511782573|gb|CM001961.1|:subseq(104115074,223959)	exonerate:protein2genome:local	intron	100134	107229	.	-	.	intron_id 8
gi|511782573|gb|CM001961.1|:subseq(104115074,223959)	exonerate:protein2genome:local	splice3	100134	100135	.	-	.	intron_id 7 ; splice_site "AG"
gi|511782573|gb|CM001961.1|:subseq(104115074,223959)	exonerate:protein2genome:local	cds	100000	100133	.	-	.	
gi|511782573|gb|CM001961.1|:subseq(104115074,223959)	exonerate:protein2genome:local	exon	100000	100133	.	-	.	insertions 0 ; deletions 0
gi|511782573|gb|CM001961.1|:subseq(104115074,223959)	exonerate:protein2genome:local	similarity	100000	124487	1491	-	.	alignment_id 1 ; Query SPP00000146_2.0 ; Align 124488 1 27 ; Align 123960 10 96 ; Align 120941 43 99 ; Align 120229 76 51 ; Align 114922 94 129 ; Align 111850 138 117 ; Align 107964 178 162 ; Align 107264 232 33 ; Align 100132 244 132
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis