Output_id:  SecS.8.homologue
----------  ----------------
-Species        Chlorocebus sabaeus                          -Taxid 60711
-Target         /home/U73970/luke/Selenoprofiles/selenoprofiles_3_installation/genome_linked/genome.fa
-Chromosome (+) gi|511782566|gb|CM001968.1|
-Program        genewise
-Query name     gi|126331854|ref|XP_001362538.1| PREDICTED: similar to UGA suppressor tRNA-associated protein (tRNA(Ser/Sec)-associated antigenic protein) (SLA/LP autoantigen) (Soluble liver antigen) (SLA) (Liver-pancreas antigen) (LP) (SLA-p35) [Monodelphis domestica]
-Query range    1-498      length:507   coverage: 0.98
-Profile range  5-852      length:861   coverage: 0.98
-ASI:           0.4159     (ignoring gaps: 0.499)
-AWSIc:         0.7503     Z-score: 0.883
-AWSIw:         0.7512     Z-score: 1.211
-State          kept

------- alignment -------
Query   MNCENFAAGERLVTPAYVRQGCEARRSHEHLIRLLLEK <---Intron---> GKCPEDGWDESTIELFLHELAIMDSNNFLGNCGVGEREGRVASGLV
        || |/||||||||/|||||||||||||||||||||||| <   1136nt   > |||||/||||||/|||||||||||||||||||||||||||||| ||
Target  MNRESFAAGERLVSPAYVRQGCEARRSHEHLIRLLLEK                GKCPENGWDESTLELFLHELAIMDSNNFLGNCGVGEREGRVASALV
        aacgatggggccgtcgtgccgtggcctcgccaccccga                gatcgagtggaacgcttcgcgaagaaattgatggggaggaggtgtg
        tagagtccgagttcccatgaggacggcaaattgtttaa   gt     ag    gagcaaggaagctatttaatcttagaattgaggtgagaggtccctt
        gccgccggcggggagtcgggctgcccgtgccaggtggg                cgtagtcgtatatactatatacgccctcactttgaagagagataat
                                                                                                            

Query   ARRHYR <---Intron---> FIHGIGRSGDIAAVQPKAAGSSLLNKIANLLVLDIIRLAG <---Intron---> VRSVANCFVVPMATGMSLTLCF
        |||||| <   1957nt   > |||||||||||/||||||||||||||| | ||||||/||| <   321nt    > | /|||||||||||||||||||
Target  ARRHYR                FIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLDIIKLAG                VHTVANCFVVPMATGMSLTLCF
        gcccta                tacgagctggatggccagggtactaaaaattgcgaaacgg                gcaggattggcagagaacactt
        cggaag   gt     ag    ttagtggcgatcctacaccgcgttaatcactttattatc    gt     ag   gtactcagtttctccgtgtctgt
        ttttc                gcttctaagtttttgaaatactctgcatcttgcgctaggt                tctaaccccattgatcgtatgtc
                                                                                                            

Query   LTLRHKRPKAKYIIWPRIDQKSCFKSMITAG <---Intron---> FEPVVIENVLEGDELHTDLKEVEAKIQELGADNILCVHSTTSCFAPRVPDR <
        ||||||||||/|||||||||||||||||||| <   887nt    > ||||||||||||||| |||| ||||/|||| | |||/|||||||||||||| <
Target  LTLRHKRPKAQYIIWPRIDQKSCFKSMITAG                FEPVVIENVLEGDELRTDLKAVEAKVQELGPDYILCIHSTTSCFAPRVPDR  
        tatccaacagctaatccagcatttataaagg                tgcggagagtggggccagcaggggagcgcgcgtactactaatttgcagcga  
        tctgaagcacaattgcgtaaacgtacttcc    gt     ag   gtactttaattagaatgcatactacataatgcaattgtaccccgtccgtcag  
        aaaacaaagagttagaaacggcctacgcta                ttgtggaattgatcggtacaaaggtacgatgttctgtttttaatttaggtt   
                                                                                                            

Query   ---Intron---> LEDLAVICAKYDIPHIVNNAYGVQSSKCMHLIQQ <---Intron---> GARVGRIDAFVQSLDKNFMVPVGGAIIAGFSDSFIQ
           2921nt   > ||/|||||| |||||||||||||||||||||||| <   6836nt   > ||||||||||||||||||||||||||||||/|||||
Target                LEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQ                GARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQ
                      tggcggatgatgaccagaagtggcttataccacc                ggcggaaggtgcatgaatagcggggaaggtagttac
         gt     ag    taatcttgcaaatcattaacagtaccagtattaa   gt     ag    gcgtggtacttagtaaatttctggcttcgtaactta
                     aaaagtgtttttctatacttttaggtagtgcctgg                gtattaattttgcgcattgtaatctattctttcctg
                                                                                                            

Query   EISKMYPG <---Intron---> RASASPSLDILITLLSLGSNGYMELLKERK <---Intron---> EMFLYLSTEVKKLSELHNERLLNTTHNPIS
        |||||||| <   132nt    > |||||||||/|||||||||||| /|||||| <  17521nt   > ||| ||| //||||| /|||||/| |||||
Target  EISKMYPG                RASASPSLDVLITLLSLGSNGYKKLLKERK                EMFSYLSNQIKKLSEAYNERLLHTPHNPIS
        gaaaatcg                agtgtcttggcaatttcgtagtaaccagaa                gatttttacaaattggtagactcaccacat
        atgatac    gt     ag   ggcccccctatttcttctgcagaaattaaga   gt     ag    attcatcaataatcacaaagttaccaactc
        accggta                aatatattatgtttagataatctagaaaaag                agtatgccaagggaacctaaggtatctcat
                                                                                                            

Query   LA <---Intron---> MSLKSLDECTHTAITQLGSMLFTRQVSGAR <---Intron---> VVPLGILHTINGYVFKGFMSHANNYPCAYLNAASAI
        || <   1473nt   > |/||/|||    |/|||||||||||||||| <   1469nt   > ||||| / |//|| |/||||| ||||||||||||||
Target  LA                MTLKTLDEHHDEAVTQLGSMLFTRQVSGAR                VVPLGSVQTVSGYTFRGFMSHTNNYPCAYLNAASAI
        tg                aacaacggccggggaccgtactaacgtgga                ggccgtgcagagtatagtatcaaatctgtcaggtga
        t    gt     ag   ctctactaaaaaactcatgctttcgatcgcg   gt     ag    ttctgctactggactggttcacaaacgcatacccct
        a                tgataaatactcatctgccggttcagttac                atgttgtgatgtcttcactgatattctttcattaacc
                                                                                                            

Query   GMKKQDVDLFIKRLDKCLKSVRKEKSKESDGVSAVDNPNITEVENIQEMALNLENTLI--------
        ||| |||||| ||||||||/||||/|||||     || / ||  /|/||||  /| |/        
Target  GMKMQDVDLFRKRLDKCLKAVRKEQSKESD-----DNYDKTEDVDIEEMALKPDNVLLDTYQDASS
        gaaacgggctaaacgattaggaagcaagag-----gatgaaggggaggagtacgagccgatcggtt
        gtataatattgagtaagtactgaaagaaga-----aaaaacaatataatctacaatttacaaaccc
        aggggtgcgcagatcgtagaaaaaatagtt-----cttcatatattaagtaaattattcacgttta
                                                                          
------- positions -------
Exon 1    25202683     25202796
Exon 2    25203933     25204087
Exon 3    25206045     25206163
Exon 4    25206485     25206643
Exon 5    25207531     25207684
Exon 6    25210606     25210708
Exon 7    25217545     25217674
Exon 8    25217807     25217898
Exon 9    25235420     25235513
Exon 10   25236987     25237077
Exon 11   25238547     25238838

-------- features -------
None
--------- 3' seq --------
Total sequence length available downstream >= 6000
Sequence until first stop codon: 
TGA
 *