genewise output
Score 1025.34 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000065_2.0    1 MNRESFAAGERLVSPAYVRQGCEARRSHEHLIRLLLEK            
                     MNRESFAAGERLVSPAYVRQGCEARRSHEHLIRLLLEK            
                     MNRESFAAGERLVSPAYVRQGCEARRSHEHLIRLLLEK            
gi|511782566|gb50000 aacgatggggccgtcgtgccgtggcctcgccaccccga            
                     tagagtccgagttcccatgaggacggcaaattgtttaa            
                     gccgccggcggggagtcgggctgcccgtgccaggtggg            


SPP00000065_2.0   39                        GKCPENGWDESTLELFLHELAIMDSN 
                                            GKCPENGWDESTLELFLHELAIMDSN 
                                            GKCPENGWDESTLELFLHELAIMDSN 
gi|511782566|gb50114 GTACCGA  Intron 1   AAGgatcgagtggaacgcttcgcgaagaa 
                     <0-----[50114:51249]-0>gagcaaggaagctatttaatcttaga 
                                            cgtagtcgtatatactatatacgccc 


SPP00000065_2.0   65 NFLGNCGVGEREGRVASALVARRHY                         
                     NFLGNCGVGEREGRVASALVARRHY                         
                     NFLGNCGVGEREGRVASALVARRHY           R:R[agg]      
gi|511782566|gb51328 attgatggggaggaggtgtggccctAGGTATCTT  Intron 2      
                     attgaggtgagaggtcccttcggaa  <2-----[51405:53361]   
                     tcactttgaagagagataatttttc                         


SPP00000065_2.0   90     FIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLDIIKLA       
                         FIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLDIIKLA       
                         FIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLDIIKLA       
gi|511782566|gb53359 TAGGtacgagctggatggccagggtactaaaaattgcgaaacg       
                     -2> ttagtggcgatcctacaccgcgttaatcactttattatc       
                         cttctaagtttttgaaatactctgcatcttgcgctaggt       


SPP00000065_2.0  130                           VHTVANCFVVPMATGMSLTLCFL 
                                               VHTVANCFVVPMATGMSLTLCFL 
                               G:G[ggt]        VHTVANCFVVPMATGMSLTLCFL 
gi|511782566|gb53480 GGTATGTA  Intron 3   TAGGTgcaggattggcagagaacacttt 
                      <1-----[53481:53801]-1>  tactcagtttctccgtgtctgtt 
                                               ctaaccccattgatcgtatgtca 


SPP00000065_2.0  154 TLRHKRPKAKYIIWPRIDQKSCFKSMITA                     
                     TLRHKRPKA+YIIWPRIDQKSCFKSMITA                     
                     TLRHKRPKAQYIIWPRIDQKSCFKSMITA                     
gi|511782566|gb53873 atccaacagctaatccagcatttataaag                     
                     ctgaagcacaattgcgtaaacgtacttcc                     
                     aaacaaagagttagaaacggcctacgcta                     


SPP00000065_2.0  183                           FEPVVIENVLEGDELRTDLKAVE 
                                               FEPVVIENVLEGDELRTDLKAVE 
                               G:G[ggt]        FEPVVIENVLEGDELRTDLKAVE 
gi|511782566|gb53960 GGTAAGAG  Intron 4   TAGGTtgcggagagtggggccagcaggg 
                      <1-----[53961:54847]-1>  tactttaattagaatgcatacta 
                                               tgtggaattgatcggtacaaagg 


SPP00000065_2.0  207 AKVQELGPDCILCIHSTTSCFAPRVPD                       
                     AKVQELGPD ILCIHSTTSCFAPRVPD                       
                     AKVQELGPDYILCIHSTTSCFAPRVPD           R:R[aga]    
gi|511782566|gb54919 gagcgcgcgtactactaatttgcagcgAGGTAAATG  Intron 5    
                     cataatgcaattgtaccccgtccgtca  <2-----[55002:57922] 
                     tacgatgttctgtttttaatttaggtt                       


SPP00000065_2.0  234     LEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQ            
                         LEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQ            
                         LEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQ            
gi|511782566|gb57920 TAGAtggcggatgatgaccagaagtggcttataccacc            
                     -2> taatcttgcaaatcattaacagtaccagtattaa            
                         aaagtgtttttctatacttttaggtagtgcctgg            


SPP00000065_2.0  269                        GARVGRIDAFVQSLDKNFMVPVGGAI 
                                            GARVGRIDAFVQSLDKNFMVPVGGAI 
                                            GARVGRIDAFVQSLDKNFMVPVGGAI 
gi|511782566|gb58026 GTAAGAG  Intron 6   TAGggcggaaggtgcatgaatagcgggga 
                     <0-----[58026:64861]-0>gcgtggtacttagtaaatttctggct 
                                            gtattaattttgcgcattgtaatcta 


SPP00000065_2.0  295 IAGFNDSFIQEISKMYP                          RASASP 
                     IAGFNDSFIQEISKMYP                          RASASP 
                     IAGFNDSFIQEISKMYP          G:G[gga]        RASASP 
gi|511782566|gb64940 aggtagttacgaaaatcGGTAAATA  Intron 7   CAGGAagtgtc 
                     tcgtaacttaatgatac <1-----[64992:65123]-1>  gccccc 
                     ttctttcctgaccggta                          atatat 


SPP00000065_2.0  319 SLDVLITLLSLGSNGYKKLLKERK                       EM 
                     SLDVLITLLSLGSNGYKKLLKERK                       EM 
                     SLDVLITLLSLGSNGYKKLLKERK                       EM 
gi|511782566|gb65144 ttggcaatttcgtagtaaccagaaGTAAGCT  Intron 8   CAGga 
                     ctatttcttctgcagaaattaaga<0-----[65216:82736]-0>at 
                     tatgtttagataatctagaaaaag                       ag 


SPP00000065_2.0  345 FSYLSNQIKKLSEAYNERLLHTPHNPISL                     
                     FSYLSNQIKKLSEAYNERLLHTPHNPISL                     
                     FSYLSNQIKKLSEAYNERLLHTPHNPISL                     
gi|511782566|gb82743 tttttacaaattggtagactcaccacatt                     
                     tcatcaataatcacaaagttaccaactct                     
                     tatgccaagggaacctaaggtatctcata                     


SPP00000065_2.0  374                           MTLKTLDEHRDKAVTQLGSMLFT 
                                               MTLKTLDEH D+AVTQLGSMLFT 
                               A:A[gct]        MTLKTLDEHHDEAVTQLGSMLFT 
gi|511782566|gb82830 GGTAATTT  Intron 9   CAGCTaacaacggccggggaccgtacta 
                      <1-----[82831:84303]-1>  tctactaaaaaactcatgctttc 
                                               gataaatactcatctgccggttc 


SPP00000065_2.0  398 RQVSGA                          VVPLGSMQTVSGYTFRG 
                     RQVSGA                          VVPLGS+QTVSGYTFRG 
                     RQVSGA           R:R[aga]       VVPLGSVQTVSGYTFRG 
gi|511782566|gb84375 acgtggAGGTAAGTA  Intron 10  CAGAggccgtgcagagtatag 
                     gatcgc  <2-----[84395:85863]-2> ttctgctactggactgg 
                     agttac                          tgttgtgatgtcttcac 


SPP00000065_2.0  422 FMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRKERSKESD 
                     FMSHTNNYPCAYLNAASAIGMKMQDVDLF KRLD+CLKAVRKE+SKESD 
                     FMSHTNNYPCAYLNAASAIGMKMQDVDLFRKRLDKCLKAVRKEQSKESD 
gi|511782566|gb85916 tatcaaatctgtcaggtgagaaacgggctaaacgattaggaagcaagag 
                     ttcacaaacgcatacccctgtataatattgagtaagtactgaaagaaga 
                     tgatattctttcattaaccaggggtgcgcagatcgtagaaaaaatagtt 


SPP00000065_2.0  471 DNYDKTEDVDIEEMALKLDNVLLDTYQDASS                   
                     DNYDKTEDVDIEEMALK DNVLLDTYQDASS                   
                     DNYDKTEDVDIEEMALKPDNVLLDTYQDASS                   
gi|511782566|gb86063 gatgaaggggaggagtacgagccgatcggtt                   
                     aaaaacaatataatctacaatttacaaaccc                   
                     cttcatatattaagtaaattattcacgttta                   


//
Making a R in phase 2 intron
Making a G in phase 1 intron
Making a G in phase 1 intron
Making a R in phase 2 intron
Making a G in phase 1 intron
Making a A in phase 1 intron
Making a R in phase 2 intron
>gi|511782566|gb|CM001968.1|:subseq(25152683,136155).pep
MNRESFAAGERLVSPAYVRQGCEARRSHEHLIRLLLEKGKCPENGWDESTLELFLHELAI
MDSNNFLGNCGVGEREGRVASALVARRHYRFIHGIGRSGDISAVQPKAAGSSLLNKITNS
LVLDIIKLAGVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAQYIIWPRIDQKSCFKSMI
TAGFEPVVIENVLEGDELRTDLKAVEAKVQELGPDYILCIHSTTSCFAPRVPDRLEELAV
ICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFND
SFIQEISKMYPGRASASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAYN
ERLLHTPHNPISLAMTLKTLDEHHDEAVTQLGSMLFTRQVSGARVVPLGSVQTVSGYTFR
GFMSHTNNYPCAYLNAASAIGMKMQDVDLFRKRLDKCLKAVRKEQSKESDDNYDKTEDVD
IEEMALKPDNVLLDTYQDASS
//
>gi|511782566|gb|CM001968.1|:subseq(25152683,136155).[50000:86155].sp
ATGAACCGCGAGAGCTTCGCGGCGGGCGAGCGGCTGGTGTCACCGGCTTACGTGCGGCAG
GGCTGTGAGGCCCGCCGCTCGCATGAGCACCTCATACGGCTGCTTCTGGAGAAGGGCAAG
TGTCCAGAGAATGGCTGGGATGAAAGTACACTTGAACTCTTTTTACATGAACTTGCAATC
ATGGACAGCAACAATTTCTTAGGCAATTGTGGTGTGGGAGAAAGGGAAGGGAGAGTGGCA
TCTGCATTAGTTGCTCGTCGTCATTACAGGTTCATTCATGGCATTGGACGATCGGGTGAT
ATTTCTGCTGTGCAACCAAAAGCTGCAGGCTCTAGCCTTTTGAACAAAATTACCAATTCT
TTGGTCCTGGACATTATAAAGCTGGCTGGTGTCCATACAGTAGCCAACTGCTTCGTAGTT
CCTATGGCAACTGGCATGAGTCTAACTCTGTGTTTCTTAACATTACGACACAAAAGACCA
AAGGCACAGTATATTATATGGCCACGAATAGACCAGAAGTCCTGCTTTAAATCCATGATC
ACTGCAGGTTTTGAGCCTGTGGTGATAGAAAATGTTTTGGAAGGTGACGAGCTGCGTACA
GACCTAAAAGCAGTGGAGGCTAAAGTCCAGGAACTTGGGCCTGATTACATTCTGTGTATT
CATTCTACTACATCATGTTTTGCTCCAAGGGTGCCTGATAGATTAGAAGAACTGGCTGTG
ATTTGTGCTAATTATGACATTCCACATATAGTCAATAATGCTTATGGAGTGCAGTCTTCA
AAGTGTATGCACCTCATTCAGCAGGGGGCTCGAGTTGGTAGAATAGATGCTTTTGTTCAG
AGCTTGGACAAAAATTTTATGGTTCCAGTAGGTGGCGCTATAATTGCTGGCTTTAATGAT
TCCTTCATTCAGGAAATCAGCAAGATGTATCCAGGAAGAGCTTCAGCTTCACCTTCTTTA
GATGTGCTTATTACTTTATTGTCACTTGGATCAAATGGCTATAAAAAGCTACTAAAAGAA
AGAAAGGAAATGTTTTCATATTTGTCCAACCAAATAAAGAAGTTGTCAGAAGCCTACAAT
GAAAGACTGTTGCATACACCTCACAATCCCATATCTTTAGCTATGACACTTAAAACACTA
GATGAACACCATGACGAAGCTGTCACTCAGCTCGGCTCGATGCTTTTTACCAGACAGGTT
TCTGGAGCCAGAGTTGTGCCTCTTGGGTCTGTGCAAACTGTGAGTGGCTATACTTTCAGA
GGCTTTATGTCACATACAAATAATTACCCTTGTGCTTACCTAAATGCTGCATCAGCCATC
GGAATGAAGATGCAGGATGTGGACCTGTTCAGAAAGAGACTTGACAAGTGTTTAAAGGCA
GTAAGAAAAGAACAAAGTAAAGAGAGTGATGACAATTATGACAAAACTGAAGATGTAGAT
ATTGAAGAAATGGCTTTAAAACCAGATAATGTACTTCTTGACACATACCAGGATGCTTCT
TCA
//
gi|511782566|gb|CM001968.1|:subseq(25152683,136155)	GeneWise	match	50000	86155	1025.34	+	.	gi|511782566|gb|CM001968.1|:subseq(25152683,136155)-genewise-prediction-1
gi|511782566|gb|CM001968.1|:subseq(25152683,136155)	GeneWise	cds	50000	50113	0.00	+	0	gi|511782566|gb|CM001968.1|:subseq(25152683,136155)-genewise-prediction-1
gi|511782566|gb|CM001968.1|:subseq(25152683,136155)	GeneWise	intron	50114	51249	0.00	+	.	gi|511782566|gb|CM001968.1|:subseq(25152683,136155)-genewise-prediction-1
gi|511782566|gb|CM001968.1|:subseq(25152683,136155)	GeneWise	cds	51250	51404	0.00	+	0	gi|511782566|gb|CM001968.1|:subseq(25152683,136155)-genewise-prediction-1
gi|511782566|gb|CM001968.1|:subseq(25152683,136155)	GeneWise	intron	51405	53361	0.00	+	.	gi|511782566|gb|CM001968.1|:subseq(25152683,136155)-genewise-prediction-1
gi|511782566|gb|CM001968.1|:subseq(25152683,136155)	GeneWise	cds	53362	53480	0.00	+	1	gi|511782566|gb|CM001968.1|:subseq(25152683,136155)-genewise-prediction-1
gi|511782566|gb|CM001968.1|:subseq(25152683,136155)	GeneWise	intron	53481	53801	0.00	+	.	gi|511782566|gb|CM001968.1|:subseq(25152683,136155)-genewise-prediction-1
gi|511782566|gb|CM001968.1|:subseq(25152683,136155)	GeneWise	cds	53802	53960	0.00	+	2	gi|511782566|gb|CM001968.1|:subseq(25152683,136155)-genewise-prediction-1
gi|511782566|gb|CM001968.1|:subseq(25152683,136155)	GeneWise	intron	53961	54847	0.00	+	.	gi|511782566|gb|CM001968.1|:subseq(25152683,136155)-genewise-prediction-1
gi|511782566|gb|CM001968.1|:subseq(25152683,136155)	GeneWise	cds	54848	55001	0.00	+	2	gi|511782566|gb|CM001968.1|:subseq(25152683,136155)-genewise-prediction-1
gi|511782566|gb|CM001968.1|:subseq(25152683,136155)	GeneWise	intron	55002	57922	0.00	+	.	gi|511782566|gb|CM001968.1|:subseq(25152683,136155)-genewise-prediction-1
gi|511782566|gb|CM001968.1|:subseq(25152683,136155)	GeneWise	cds	57923	58025	0.00	+	1	gi|511782566|gb|CM001968.1|:subseq(25152683,136155)-genewise-prediction-1
gi|511782566|gb|CM001968.1|:subseq(25152683,136155)	GeneWise	intron	58026	64861	0.00	+	.	gi|511782566|gb|CM001968.1|:subseq(25152683,136155)-genewise-prediction-1
gi|511782566|gb|CM001968.1|:subseq(25152683,136155)	GeneWise	cds	64862	64991	0.00	+	0	gi|511782566|gb|CM001968.1|:subseq(25152683,136155)-genewise-prediction-1
gi|511782566|gb|CM001968.1|:subseq(25152683,136155)	GeneWise	intron	64992	65123	0.00	+	.	gi|511782566|gb|CM001968.1|:subseq(25152683,136155)-genewise-prediction-1
gi|511782566|gb|CM001968.1|:subseq(25152683,136155)	GeneWise	cds	65124	65215	0.00	+	2	gi|511782566|gb|CM001968.1|:subseq(25152683,136155)-genewise-prediction-1
gi|511782566|gb|CM001968.1|:subseq(25152683,136155)	GeneWise	intron	65216	82736	0.00	+	.	gi|511782566|gb|CM001968.1|:subseq(25152683,136155)-genewise-prediction-1
gi|511782566|gb|CM001968.1|:subseq(25152683,136155)	GeneWise	cds	82737	82830	0.00	+	0	gi|511782566|gb|CM001968.1|:subseq(25152683,136155)-genewise-prediction-1
gi|511782566|gb|CM001968.1|:subseq(25152683,136155)	GeneWise	intron	82831	84303	0.00	+	.	gi|511782566|gb|CM001968.1|:subseq(25152683,136155)-genewise-prediction-1
gi|511782566|gb|CM001968.1|:subseq(25152683,136155)	GeneWise	cds	84304	84394	0.00	+	2	gi|511782566|gb|CM001968.1|:subseq(25152683,136155)-genewise-prediction-1
gi|511782566|gb|CM001968.1|:subseq(25152683,136155)	GeneWise	intron	84395	85863	0.00	+	.	gi|511782566|gb|CM001968.1|:subseq(25152683,136155)-genewise-prediction-1
gi|511782566|gb|CM001968.1|:subseq(25152683,136155)	GeneWise	cds	85864	86155	0.00	+	1	gi|511782566|gb|CM001968.1|:subseq(25152683,136155)-genewise-prediction-1
//