Command line: [exonerate -m p2g --showtargetgff -q sbp2.query.U_to_X -t gi|511782581|gb|CM001953.1|.fastasubseq]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000054_2.0 # Protein # SECIS binding protein 2 (SBP2) # Human (Homo sapiens) 
        Target: gi|511782581|gb|CM001953.1|:subseq(99765184,139024) Chlorocebus sabaeus isolate 1994-021 chromosome 12, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 4051
   Query range: 0 -> 854
  Target range: 48881 -> 89665

     1 : MetAlaSerGluGlyProArgGluProGluSerGlu  >>>> Target Intron 1 > :    13
         ||||||||||||||||||||||||||||||||||||           1085 bp      
         MetAlaSerGluGlyProArgGluProGluSerGlu++                      
 48882 : ATGGCGTCGGAGGGGCCGCGGGAGCCCGAAAGCGAGgt...................... : 48920

    14 : >>>  GlyIleLysLeuSerAlaAspValLysProPheValProArgPheAlaGlyLeuA :    31
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||
            ++GlyIleLysLeuSerAlaAspValLysProPheValProArgPheAlaGlyLeuA
 48921 : ...agGGCATCAAGTTATCAGCAGATGTCAAACCATTTGTCCCCAGATTTGCCGGGCTCA : 50057

    32 : snValAlaTrpLeuGluSerSerGluAlaCysValPheProSerSerAlaAlaThrTyrT :    51
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         snValAlaTrpLeuGluSerSerGluAlaCysValPheProSerSerAlaAlaThrTyrT
 50058 : ATGTGGCATGGTTAGAGTCCTCAGAAGCATGTGTCTTCCCCAGCTCTGCAGCCACATACT : 50117

    52 : yrProPheValGlnGluProProValThr{Gl}  >>>> Target Intron 2 >>>> :    61
         |||||||||||||||||||||||||||||{||}           5063 bp         
         yrProPheValGlnGluProProValThr{Gl}++                         
 50118 : ATCCGTTTGTTCAGGAACCACCAGTGACC{GA}gt......................... : 50151

    62 :   {u}GlnLysIleTyrThrGluAspMetAlaPheGlyAlaSerThrPheProProGlnT :    80
           {|}|||||||||||||||||||||||||||||||||||||||||||||||||||||||
         ++{u}GlnLysIleTyrThrGluAspMetAlaPheGlyAlaSerThrPheProProGlnT
 50152 : ag{G}CAGAAAATATATACTGAAGACATGGCCTTTGGAGCTTCAACTTTTCCACCTCAGT : 55267

    81 : yrLeuSerSerGluIleThrLeuHisProTyrAlaTyrSerProTyrThrLeuAspSerT :   100
         ||||||||||||||:!!|||||||||||||||||||||||||||||||||||||||||||
         yrLeuSerSerGluValThrLeuHisProTyrAlaTyrSerProTyrThrLeuAspSerT
 55268 : ATTTATCTTCTGAGGTAACTCTTCATCCATATGCCTATTCTCCTTATACCCTTGACTCCA : 55327

   101 : hrGlnAsnValTyrSerValProGlySerGlnTyrLeuTyrAsnGlnProSerCysTyrA :   120
         |||||||||||||||||||||||||||||||||||! !||||||||||||||||||||||
         hrGlnAsnValTyrSerValProGlySerGlnTyrHisTyrAsnGlnProSerCysTyrA
 55328 : CACAGAATGTTTACTCAGTGCCTGGCTCCCAGTATCATTATAACCAACCCAGTTGTTACC : 55387

   121 : rgGlyPheGlnThrValLysHisArgAsnGluAsnThrCysProLeuProGlnGluMetL :   140
         ||.!!||||||||||||||||||||||||||||||..!||||||||||||||||||||||
         rgSerPheGlnThrValLysHisArgAsnGluAsnValCysProLeuProGlnGluMetL
 55388 : GAAGTTTTCAGACAGTGAAGCATCGAAATGAGAACGTGTGCCCTCTCCCACAAGAAATGA : 55447

   141 : ysAlaLeuPheLys  >>>> Target Intron 3 >>>>  LysLysThrTyrAspGl :   150
         ||||||||||||||            217 bp           |||||||||||||||||
         ysAlaLeuPheLys++                         ++LysLysThrTyrAspGl
 55448 : AAGCTCTGTTTAAGgt.........................agAAAAAAACCTATGATGA : 55694

   151 : uLysLysThrTyrAspGlnGlnLysPheAspSerGluArgAlaAspGlyThrIleSerSe :   170
         ||||||||||||||||||||||||||||||||||||||||.!!|||||||||||||||||
         uLysLysThrTyrAspGlnGlnLysPheAspSerGluArgThrAspGlyThrIleSerSe
 55695 : GAAAAAAACGTATGATCAGCAAAAGTTTGACAGTGAAAGAACTGACGGAACTATATCATC : 55754

   171 : rGluIleLysSerAlaArgGlySerHisHisLeuSerIleTyrAlaGluAsnSerLeuLy :   190
         |||||||||||||||| !!||||||||||||||||||||||||||||||!:!||||||||
         rGluIleLysSerAlaGlyGlySerHisHisLeuSerIleTyrAlaGluSerSerLeuLy
 55755 : CGAGATAAAATCAGCTGGAGGTTCACATCATTTGTCCATTTATGCTGAGAGTAGTTTGAA : 55814

   191 : sSer{A}  >>>> Target Intron 4 >>>>  {sp}GlyTyrHisLysArgThrAs :   199
         ||||{|}           2666 bp           {||}||||||||||||||||||||
         sSer{A}++                         ++{sp}GlyTyrHisLysArgThrAs
 55815 : ATCA{G}gt.........................ag{AT}GGTTACCATAAGCGAACAGA : 58507

   200 : pArgLysSerArgIleIleAlaLysAsnValSerThrSerLysProGluPheGluPheTh :   219
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         pArgLysSerArgIleIleAlaLysAsnValSerThrSerLysProGluPheGluPheTh
 58508 : CAGGAAATCCAGAATCATTGCAAAAAATGTATCTACCTCCAAACCTGAGTTTGAATTTAC : 58567

   220 : rThrLeuAspPheProGluLeuGlnGlyAlaGluAsnAsnMetSerGluIleGlnLysGl :   239
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         rThrLeuAspPheProGluLeuGlnGlyAlaGluAsnAsnMetSerGluIleGlnLysGl
 58568 : CACACTGGACTTTCCAGAACTGCAAGGTGCAGAGAACAATATGTCAGAGATACAGAAACA : 58627

   240 : nProLysTrpGlyProValHisSerValSerThrAspIleSerLeuLeuArgGluValVa :   259
         |||||||||||||||||||||||||!.!||||||||||||||||||||||||||||||||
         nProLysTrpGlyProValHisSerAlaSerThrAspIleSerLeuLeuArgGluValVa
 58628 : ACCCAAGTGGGGACCTGTCCACTCTGCCTCTACCGACATTTCTCTTCTAAGAGAAGTAGT : 58687

   260 : lLysProAlaAlaValLeuSerLys  >>>> Target Intron 5 >>>>  GlyGlu :   269
         |||||||||||||||||||||||||           4470 bp           ||||||
         lLysProAlaAlaValLeuSerLys++                         ++GlyGlu
 58688 : AAAACCAGCTGCAGTGTTATCAAAGgt.........................agGGTGAA : 63187

   270 : IleValValLys<->AsnAsnProAsnGluSerValThrAlaAsnAlaAlaThrAsnSer :   288
         ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||
         IleValValLysAsnAsnAsnProAsnGluSerValThrAlaAsnAlaAlaThrAsnSer
 63188 : ATAGTGGTGAAAAATAATAACCCAAATGAATCTGTAACTGCTAATGCTGCTACCAATTCT : 63247

   289 : ProSerCysThrArg{G}  >>>> Target Intron 6 >>>>  {lu}LeuSerTrp :   297
          !!||||||||||||{|}           1537 bp           {||}|||||||||
         SerSerCysThrArg{G}++                         ++{lu}LeuSerTrp
 63248 : TCTTCATGTACAAGA{G}gt.........................ag{AG}TTATCTTGG : 64811

   298 : ThrProMetGlyTyrValValArgGlnThrLeuSerThrGluLeuSerAlaAlaProLys :   317
         |||||||||||||||||||||||||||||||||||||||||||||||| !!|||||||||
         ThrProMetGlyTyrValValArgGlnThrLeuSerThrGluLeuSerProAlaProLys
 64812 : ACACCAATGGGTTATGTTGTTCGACAGACATTATCTACAGAACTGTCACCAGCCCCTAAA : 64871

   318 : AsnValThrSerMetIleAsnLeuLysThrIleAlaSerSerAlaAspProLysAsnVal :   337
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         AsnValThrSerMetIleAsnLeuLysThrIleAlaSerSerAlaAspProLysAsnVal
 64872 : AATGTTACTTCTATGATAAACTTAAAGACCATTGCTTCATCAGCAGATCCTAAAAATGTT : 64931

   338 : SerIleProSerSerGluAlaLeuSerSerAspProSerTyrAsnLysGluLysHisIle :   357
         |||||||||||||||||||||||||||||||||! !||||||||||||||||||||||||
         SerIleProSerSerGluAlaLeuSerSerAspArgSerTyrAsnLysGluLysHisIle
 64932 : AGTATACCATCTTCTGAAGCTTTATCTTCGGATCGTTCCTACAACAAAGAAAAACACATT : 64991

   358 : IleHisProThrGlnLys  >>>> Target Intron 7 >>>>  SerLysAlaSerG :   368
         :!!|||||||||||||||           3748 bp           |||||||||||||
         ValHisProThrGlnLys++                         ++SerLysAlaSerG
 64992 : GTTCATCCTACCCAAAAGgt.........................agTCTAAAGCATCAC : 68772

   369 : lnGlySerAspLeuGluGlnAsnGluAlaSerArgLysAsnLysLysLysLysGluLysS :   388
         ||||||||||||||||||||||||||||||||||||||!:!|||||||||||||||||||
         lnGlySerAspLeuGluGlnAsnGluAlaSerArgLysSerLysLysLysLysGluLysS
 68773 : AAGGTAGCGACCTTGAACAAAATGAAGCCTCAAGAAAGAGTAAGAAAAAGAAAGAAAAAT : 68832

   389 : erThrSerLysTyrGluValLeuThrValGlnGluProProArgIleGlu  >>>> Tar :   405
         ||! !|||||||||||||||||||||||||||||||||||||||||||||          
         erIleSerLysTyrGluValLeuThrValGlnGluProProArgIleGlu++        
 68833 : CTATATCAAAATATGAAGTCCTGACAGTTCAAGAGCCTCCAAGGATTGAAgt........ : 68885

   406 : get Intron 8 >>>>  AspAlaGluGluPheProAsnLeuAlaValAlaSerGluAr :   418
          1333 bp           |||||||||||||||||||||||||||||||||||||||||
                          ++AspAlaGluGluPheProAsnLeuAlaValAlaSerGluAr
 68886 : .................agGATGCCGAGGAATTTCCCAACCTGGCAGTTGCATCTGAAAG : 70255

   419 : gArgAspArgIleGluThrProLysPheGlnSerLysGlnGlnProGln  >>>> Targ :   435
         |||||||||||||||||||||||||||||||||||||||||||||||||           
         gArgAspArgIleGluThrProLysPheGlnSerLysGlnGlnProGln++         
 70256 : AAGAGACAGAATAGAAACACCGAAATTTCAGTCTAAACAGCAACCACAGgt......... : 70308

   436 : et Intron 9 >>>>  AspAsnPheLysAsnAsnValLysLysSerGlnLeuProVal :   448
         1546 bp           |||||||||!:!||||||||||||||||||||||||||||||
                         ++AspAsnPheArgAsnAsnValLysLysSerGlnLeuProVal
 70309 : ................agGATAATTTTAGAAACAATGTAAAGAAGAGCCAGCTTCCAGTG : 71891

   449 : GlnLeuAspLeuGlyGlyMetLeuThrAlaLeuGluLysLysGlnHisSerGlnHisAla :   468
         ||||||||||||||||||:!!|||||||||||||||||||||||||||||||||||||||
         GlnLeuAspLeuGlyGlyValLeuThrAlaLeuGluLysLysGlnHisSerGlnHisAla
 71892 : CAGCTGGATTTGGGGGGCGTGCTGACAGCCCTGGAGAAGAAGCAGCACTCTCAGCATGCA : 71951

   469 : LysGlnSerSerLysProValValValSer{V}  >>>> Target Intron 10 >>> :   479
         ||||||||||||||||||||||||||||||{|}            5764 bp        
         LysGlnSerSerLysProValValValSer{V}++                         
 71952 : AAGCAGTCCTCCAAACCAGTGGTAGTCTCA{G}gt......................... : 71987

   480 : >  {al}GlyAlaValProValLeuSerLysGluCysAlaSerGlyGluArgGlyArgAr :   497
            {||}|||||||||||||||||||||||||||||||||||||||||||||||||||||
          ++{al}GlyAlaValProValLeuSerLysGluCysAlaSerGlyGluArgGlyArgAr
 71988 : .ag{TT}GGAGCAGTGCCAGTCCTTTCCAAAGAATGTGCGTCAGGGGAGAGAGGCCGCCG : 77802

   498 : gMetSerGlnMetLysThrProHisAsnProLeuAspSerSerAlaProLeuMetLysLy :   517
         |:!!||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         gValSerGlnMetLysThrProHisAsnProLeuAspSerSerAlaProLeuMetLysLy
 77803 : TGTGAGTCAAATGAAGACCCCACACAATCCCTTGGACTCCAGCGCCCCGCTGATGAAGAA : 77862

   518 : sGlyLysGlnArgGluIleProLysAlaLysLysProThrSerLeuLysLys  >>>> T :   535
         ||||||||||||||||||||||||||||||||||||||||||||||||||||        
         sGlyLysGlnArgGluIleProLysAlaLysLysProThrSerLeuLysLys++      
 77863 : AGGGAAGCAGAGGGAGATCCCCAAGGCCAAGAAGCCAACCTCACTGAAGAAGgt...... : 77918

   536 : arget Intron 11 >>>>  IleIleLeuLysGluArgGlnGluArgLys<->GlnAr :   546
             1043 bp           ||||||||||||||||||||||||||||||   |||||
                             ++IleIleLeuLysGluArgGlnGluArgLysGlnGlnAr
 77919 : ....................agATTATTTTGAAAGAACGGCAAGAGAGAAAGCAGCAGCG : 78995

   547 : gLeuGlnGluAsnAlaValSerProAlaPheThrSerAspAspThrGlnAspGlyGluSe :   566
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         gLeuGlnGluAsnAlaValSerProAlaPheThrSerAspAspThrGlnAspGlyGluSe
 78996 : TCTCCAAGAAAATGCTGTGAGTCCAGCTTTTACCAGTGATGACACACAAGATGGAGAGAG : 79055

   567 : rGlyGlyAspAspGlnPheProGluGlnAlaGluLeuSer{G}  >>>> Target Int :   580
         |||||||||||||||| !!|||||||||||||||  !|||{|}            1545 
         rGlyGlyAspAspGlnValProGluGlnAlaGluAlaSer{G}++               
 79056 : TGGTGGTGATGACCAGGTTCCCGAGCAGGCAGAGGCCTCA{G}gt............... : 79100

   581 : ron 12 >>>>  {ly}ProGluGlyMetAspGluLeuIleSerThrProSerValGluA :   595
         bp           {||}||||||||||||||||||! !||||||||| !!:!!:!!! !!
                    ++{ly}ProGluGlyMetAspGluProIleSerThrSerAlaIleValG
 79101 : ...........ag{GG}CCAGAGGGGATGGACGAACCGATCTCCACTTCTGCGATTGTGG : 80687

   596 : spLysSerGluGluProProGlyThrGluLeuGlnArgAspThrGluAlaSerHisLeuA :   615
          !||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         lyLysSerGluGluProProGlyThrGluLeuGlnArgAspThrGluAlaSerHisLeuA
 80688 : GCAAGTCTGAAGAGCCACCAGGCACAGAACTCCAGAGGGACACAGAGGCCTCCCACCTTG : 80747

   616 : laProAsnHisThrThrPheProLysIleHisSerArgArgPheArg{As}  >>>> Ta :   631
         |||||||||||.!!|||||||||||||||||||||||||||||||||{||}         
         laProAsnHisAlaThrPheProLysIleHisSerArgArgPheArg{As}++       
 80748 : CTCCCAATCACGCCACCTTCCCTAAGATCCACAGCCGCAGATTCAGG{GA}gt....... : 80799

   632 : rget Intron 13 >>>>  {p}TyrCysSerGlnMetLeuSerLysGluValAspAla :   643
            705 bp            {|}||||||||||||||||||||||||||||||||||||
                            ++{p}TyrCysSerGlnMetLeuSerLysGluValAspAla
 80800 : ...................ag{T}TACTGCAGCCAGATGCTTAGTAAAGAAGTGGATGCT : 81536

   644 : CysValThrAspLeuLeuLysGluLeuValArgPheGlnAspArgMetTyrGlnLysAsp :   663
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         CysValThrAspLeuLeuLysGluLeuValArgPheGlnAspArgMetTyrGlnLysAsp
 81537 : TGTGTTACCGACCTACTCAAAGAACTGGTCCGTTTCCAAGACCGTATGTACCAGAAAGAT : 81596

   664 : ProValLysAlaLysThrLysArgArgLeuValLeuGlyLeuArgGluValLeuLysHis :   683
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         ProValLysAlaLysThrLysArgArgLeuValLeuGlyLeuArgGluValLeuLysHis
 81597 : CCAGTCAAGGCCAAGACTAAACGTCGACTTGTGTTGGGGTTGAGGGAAGTTCTCAAACAC : 81656

   684 : LeuLysLeuLysLysLeuLysCysValIleIleSerProAsnCysGluLysIleGlnSer :   703
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         LeuLysLeuLysLysLeuLysCysValIleIleSerProAsnCysGluLysIleGlnSer
 81657 : CTGAAGCTCAAAAAACTGAAATGTGTCATTATTTCTCCCAACTGTGAGAAGATACAGTCA : 81716

   704 : Lys{G}  >>>> Target Intron 14 >>>>  {ly}GlyLeuAspAspThrLeuHi :   712
         |||{|}            6516 bp           {||}||||||||||||||||||||
         Lys{G}++                          ++{ly}GlyLeuAspAspThrLeuHi
 81717 : AAA{G}gt..........................ag{GT}GGGCTGGATGACACTTTGCA : 88259

   713 : sThrIleIleAspTyrAlaCysGluGlnAsnIleProPheValPheAlaLeuAsnArgLy :   732
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         sThrIleIleAspTyrAlaCysGluGlnAsnIleProPheValPheAlaLeuAsnArgLy
 88260 : CACAATTATTGATTATGCCTGTGAGCAGAACATTCCCTTTGTGTTTGCTCTCAACCGCAA : 88319

   733 : sAlaLeuGlyArgSerLeuAsnLysAlaValProValSerValValGlyIlePheSerTy :   752
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         sAlaLeuGlyArgSerLeuAsnLysAlaValProValSerValValGlyIlePheSerTy
 88320 : AGCTCTGGGGCGCAGTTTGAATAAGGCAGTTCCTGTCAGCGTGGTAGGGATCTTCAGCTA : 88379

   753 : rAspGlyAlaGln  >>>> Target Intron 15 >>>>  AspGlnPheHisLysMe :   762
         |||||||||||||            433 bp            |||||||||||||||||
         rAspGlyAlaGln++                          ++AspGlnPheHisLysMe
 88380 : CGATGGGGCCCAGgt..........................agGATCAGTTCCACAAGAT : 88842

   763 : tValGluLeuThrValAlaAlaArgGlnAlaTyrLysThrMetLeuGluAsnValGlnGl :   782
         |||||||||||||:!!||||||||||||||||||||||||||||||||||||||||||||
         tValGluLeuThrMetAlaAlaArgGlnAlaTyrLysThrMetLeuGluAsnValGlnGl
 88843 : GGTTGAGCTGACAATGGCGGCCCGACAGGCGTACAAGACCATGCTGGAGAATGTGCAGCA : 88902

   783 : nGluLeuValGlyGluProArgProGlnAlaProProSerLeuProThrGlnGlyProSe :   802
         |||||||!.!||||||||||||||||||||||||||||||! !|||||||||||||||||
         nGluLeuAlaGlyGluProArgProGlnAlaProProSerProProThrGlnGlyProSe
 88903 : GGAGCTGGCGGGAGAACCCAGGCCTCAGGCACCTCCCAGCCCGCCCACACAGGGCCCCAG : 88962

   803 : rCysProAlaGluAspGlyProProAlaLeuLysGluLysGluGluProHisTyr{I}   :   821
         |||||||||||||||||||||||||||||||! !|||||||||||||||||||||{|}  
         rCysProAlaGluAspGlyProProAlaLeuThrGluLysGluGluProHisTyr{I}++
 88963 : CTGCCCTGCAGAAGATGGCCCCCCAGCCCTGACAGAAAAAGAAGAGCCACACTAC{A}gt : 89020

   822 : >>>> Target Intron 16 >>>>  {le}GluIleTrpLysLysHisLeuGluAlaT :   831
                   545 bp            {||}||||||||||||||||||||||||||||
                                   ++{le}GluIleTrpLysLysHisLeuGluAlaT
 89021 : ..........................ag{TT}GAAATCTGGAAAAAACATCTGGAAGCAT : 89594

   832 : yrSerGlyCysThrLeuGluLeuGluGluSerLeuGluAlaSerThrSerGlnMetMetA :   851
         |||||  !|||.!!||||||||||||||||||||||||||||||||||||||||||||||
         yrSerProCysAlaLeuGluLeuGluGluSerLeuGluAlaSerThrSerGlnMetMetA
 89595 : ACAGTCCATGTGCCCTGGAGCTAGAGGAATCCTTGGAGGCTTCAACCTCTCAAATGATGA : 89654

   852 : snLeuAsnLeu :   854
         |||||||||||
         snLeuAsnLeu
 89655 : ATTTGAATTTA : 89665

vulgar: SPP00000054_2.0 0 854 . gi|511782581|gb|CM001953.1|:subseq(99765184,139024) 48881 89665 + 4051 M 12 36 5 0 2 I 0 1081 3 0 2 M 48 144 S 0 2 5 0 2 I 0 5059 3 0 2 S 1 1 M 83 249 5 0 2 I 0 213 3 0 2 M 47 141 S 0 1 5 0 2 I 0 2662 3 0 2 S 1 2 M 75 225 5 0 2 I 0 4466 3 0 2 M 6 18 G 0 3 M 20 60 S 0 1 5 0 2 I 0 1533 3 0 2 S 1 2 M 69 207 5 0 2 I 0 3744 3 0 2 M 41 123 5 0 2 I 0 1329 3 0 2 M 30 90 5 0 2 I 0 1542 3 0 2 M 44 132 S 0 1 5 0 2 I 0 5760 3 0 2 S 1 2 M 55 165 5 0 2 I 0 1039 3 0 2 M 10 30 G 0 3 M 35 105 S 0 1 5 0 2 I 0 1541 3 0 2 S 1 2 M 50 150 S 0 2 5 0 2 I 0 701 3 0 2 S 1 1 M 73 219 S 0 1 5 0 2 I 0 6512 3 0 2 S 1 2 M 51 153 5 0 2 I 0 429 3 0 2 M 64 192 S 0 1 5 0 2 I 0 541 3 0 2 S 1 2 M 33 99
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-05
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	gene	48882	89665	4051	+	.	gene_id 1 ; sequence SPP00000054_2.0 ; gene_orientation +
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	cds	48882	48917	.	+	.	
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	exon	48882	48917	.	+	.	insertions 0 ; deletions 0
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	splice5	48918	48919	.	+	.	intron_id 1 ; splice_site "GT"
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	intron	48918	50002	.	+	.	intron_id 1
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	splice3	50001	50002	.	+	.	intron_id 0 ; splice_site "AG"
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	cds	50003	50148	.	+	.	
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	exon	50003	50148	.	+	.	insertions 0 ; deletions 0
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	splice5	50149	50150	.	+	.	intron_id 2 ; splice_site "GT"
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	intron	50149	55211	.	+	.	intron_id 2
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	splice3	55210	55211	.	+	.	intron_id 1 ; splice_site "AG"
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	cds	55212	55461	.	+	.	
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	exon	55212	55461	.	+	.	insertions 0 ; deletions 0
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	splice5	55462	55463	.	+	.	intron_id 3 ; splice_site "GT"
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	intron	55462	55678	.	+	.	intron_id 3
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	splice3	55677	55678	.	+	.	intron_id 2 ; splice_site "AG"
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	cds	55679	55820	.	+	.	
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	exon	55679	55820	.	+	.	insertions 0 ; deletions 0
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	splice5	55821	55822	.	+	.	intron_id 4 ; splice_site "GT"
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	intron	55821	58486	.	+	.	intron_id 4
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	splice3	58485	58486	.	+	.	intron_id 3 ; splice_site "AG"
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	cds	58487	58713	.	+	.	
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	exon	58487	58713	.	+	.	insertions 0 ; deletions 0
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	splice5	58714	58715	.	+	.	intron_id 5 ; splice_site "GT"
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	intron	58714	63183	.	+	.	intron_id 5
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	splice3	63182	63183	.	+	.	intron_id 4 ; splice_site "AG"
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	cds	63184	63265	.	+	.	
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	exon	63184	63265	.	+	.	insertions 3 ; deletions 0
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	splice5	63266	63267	.	+	.	intron_id 6 ; splice_site "GT"
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	intron	63266	64802	.	+	.	intron_id 6
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	splice3	64801	64802	.	+	.	intron_id 5 ; splice_site "AG"
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	cds	64803	65011	.	+	.	
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	exon	64803	65011	.	+	.	insertions 0 ; deletions 0
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	splice5	65012	65013	.	+	.	intron_id 7 ; splice_site "GT"
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	intron	65012	68759	.	+	.	intron_id 7
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	splice3	68758	68759	.	+	.	intron_id 6 ; splice_site "AG"
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	cds	68760	68882	.	+	.	
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	exon	68760	68882	.	+	.	insertions 0 ; deletions 0
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	splice5	68883	68884	.	+	.	intron_id 8 ; splice_site "GT"
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	intron	68883	70215	.	+	.	intron_id 8
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	splice3	70214	70215	.	+	.	intron_id 7 ; splice_site "AG"
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	cds	70216	70305	.	+	.	
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	exon	70216	70305	.	+	.	insertions 0 ; deletions 0
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	splice5	70306	70307	.	+	.	intron_id 9 ; splice_site "GT"
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	intron	70306	71851	.	+	.	intron_id 9
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	splice3	71850	71851	.	+	.	intron_id 8 ; splice_site "AG"
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	cds	71852	71984	.	+	.	
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	exon	71852	71984	.	+	.	insertions 0 ; deletions 0
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	splice5	71985	71986	.	+	.	intron_id 10 ; splice_site "GT"
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	intron	71985	77748	.	+	.	intron_id 10
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	splice3	77747	77748	.	+	.	intron_id 9 ; splice_site "AG"
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	cds	77749	77915	.	+	.	
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	exon	77749	77915	.	+	.	insertions 0 ; deletions 0
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	splice5	77916	77917	.	+	.	intron_id 11 ; splice_site "GT"
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	intron	77916	78958	.	+	.	intron_id 11
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	splice3	78957	78958	.	+	.	intron_id 10 ; splice_site "AG"
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	cds	78959	79097	.	+	.	
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	exon	78959	79097	.	+	.	insertions 3 ; deletions 0
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	splice5	79098	79099	.	+	.	intron_id 12 ; splice_site "GT"
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	intron	79098	80642	.	+	.	intron_id 12
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	splice3	80641	80642	.	+	.	intron_id 11 ; splice_site "AG"
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	cds	80643	80796	.	+	.	
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	exon	80643	80796	.	+	.	insertions 0 ; deletions 0
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	splice5	80797	80798	.	+	.	intron_id 13 ; splice_site "GT"
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	intron	80797	81501	.	+	.	intron_id 13
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	splice3	81500	81501	.	+	.	intron_id 12 ; splice_site "AG"
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	cds	81502	81722	.	+	.	
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	exon	81502	81722	.	+	.	insertions 0 ; deletions 0
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	splice5	81723	81724	.	+	.	intron_id 14 ; splice_site "GT"
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	intron	81723	88238	.	+	.	intron_id 14
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	splice3	88237	88238	.	+	.	intron_id 13 ; splice_site "AG"
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	cds	88239	88393	.	+	.	
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	exon	88239	88393	.	+	.	insertions 0 ; deletions 0
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	splice5	88394	88395	.	+	.	intron_id 15 ; splice_site "GT"
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	intron	88394	88826	.	+	.	intron_id 15
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	splice3	88825	88826	.	+	.	intron_id 14 ; splice_site "AG"
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	cds	88827	89019	.	+	.	
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	exon	88827	89019	.	+	.	insertions 0 ; deletions 0
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	splice5	89020	89021	.	+	.	intron_id 16 ; splice_site "GT"
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	intron	89020	89564	.	+	.	intron_id 16
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	splice3	89563	89564	.	+	.	intron_id 15 ; splice_site "AG"
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	cds	89565	89665	.	+	.	
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	exon	89565	89665	.	+	.	insertions 0 ; deletions 0
gi|511782581|gb|CM001953.1|:subseq(99765184,139024)	exonerate:protein2genome:local	similarity	48882	89665	4051	+	.	alignment_id 1 ; Query SPP00000054_2.0 ; Align 48882 1 36 ; Align 50003 13 144 ; Align 55213 62 249 ; Align 55679 145 141 ; Align 58489 193 225 ; Align 63184 268 18 ; Align 63205 274 60 ; Align 64805 295 207 ; Align 68760 364 123 ; Align 70216 405 90 ; Align 71852 435 132 ; Align 77751 480 165 ; Align 78959 535 30 ; Align 78992 545 105 ; Align 80645 581 150 ; Align 81503 632 219 ; Align 88241 706 153 ; Align 88827 757 192 ; Align 89567 822 99
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis