Output_id:  SBP2.34.homologue
----------  -----------------
-Species        Chlorocebus sabaeus                          -Taxid 60711
-Target         /home/U73970/luke/Selenoprofiles/selenoprofiles_3_installation/genome_linked/genome.fa
-Chromosome (+) gi|511782581|gb|CM001953.1|
-Program        genewise
-Query name     gi|83779010|ref|NP_076982.3| SECIS binding protein 2 [Homo sapiens] gi|52788293|sp|Q96T21.2|SEBP2_HUMAN RecName: Full=SECIS-binding protein 2_ AltName: Full=Selenocysteine insertion sequence-binding protein 2 gi|66347402|emb|CAI41364.2| SECIS binding pro
-Query range    1-854      length:854   coverage: 1.0
-Profile range  1-1503     length:1503  coverage: 1.0
-ASI:           0.3393     (ignoring gaps: 0.4841)
-AWSIc:         0.7372     Z-score: 1.355
-AWSIw:         0.7272     Z-score: 1.308
-State          kept

------- alignment -------
Query   MASEGPREPESE <---Intron---> GIKLSADVKPFVPRFAGLNVAWLESSEACVFPSSAATYYPFVQEPPVTE <---Intron---> QKIYTED
        |||||||||||| <   1085nt   > ||||||||||||||||||||||||||||||||||||||||||||||||| <   5063nt   > |||||||
Target  MASEGPREPESE                GIKLSADVKPFVPRFAGLNVAWLESSEACVFPSSAATYYPFVQEPPVTE                QKIYTED
        agtggccgcgag                gaattgggactgcatggcaggttgttggtgtcatggattctgcgccgag                caatagg
        tccagcgacaga   gt     ag    gtatccatacttcgtcgtatcgtaccacgttcgccccaacttaacctca   gt     ag    aatacaa
        ggggggggcacg                ccgaaatcaatccatcgctgagagcaaatcccctacactgttgaaagc                ggaattac
                                                                                                            

Query   MAFGASTFPPQYLSSEITLHPYAYSPYTLDSTQNVYSVPGSQYLYNQPSCYRGFQTVKHRNENTCPLPQEMKALFK <---Intron---> KKTYDEKK
        ||||||||||||||||/|||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||| <   217nt    > ||||||||
Target  MAFGASTFPPQYLSSEVTLHPYAYSPYTLDSTQNVYSVPGSQYHYNQPSCYRSFQTVKHRNENVCPLPQEMKALFK                KKTYDEKK
        agtggtatcccttttggaccctgttctacgtacagttgcgtctctaccattcatcagaccagagtccccgaagcta                aaatggaa
        tctgccctccaatccatctacacaccactaccaatactcgcaaaaaacggaggtactaagaaatgctcaatactta   gt     ag    aacaaaaa
        gctatattatgtattgatttatcttttctccagttcagtccgtttcacttcattgaggtatgcgctcaaagatgtg                aacttgaa
                                                                                                            

Query   TYDQQKFDSERADGTISSEIKSARGSHHLSIYAENSLKSD <---Intron---> GYHKRTDRKSRIIAKNVSTSKPEFEFTTLDFPELQGAENNMSEI
        ||||||||||| ||||||||||| ||||||||||/||||| <   2666nt   > ||||||||||||||||||||||||||||||||||||||||||||
Target  TYDQQKFDSERTDGTISSEIKSAGGSHHLSIYAESSLKSD                GYHKRTDRKSRIIAKNVSTSKPEFEFTTLDFPELQGAENNMSEI
        atgccatgagaaggaattgaatgggtccttatggaatatg                gtcacagaataaagaagtatacgtgtaacgtcgccgggaaatga
        caaaaatagagcagctccataccggcaatctacaggtac    gt     ag   agaaagcagacgttcaatcccacatatcctatcatagcaaatcat
        gttgagtctaatcataacgaaatatattgctttgttgaa                ttctgaacgacactaatatccatgtatcagctaagatagctgaga
                                                                                                            

Query   QKQPKWGPVHSVSTDISLLREVVKPAAVLSK <---Intron---> GEIVVKNN-PNESVTANAATNSPSCTRE <---Intron---> LSWTPMGYV
        ||||||||||| ||||||||||||||||||| <   4470nt   > |||||||| ||||||||||||| ||||| <   1537nt   > |||||||||
Target  QKQPKWGPVHSASTDISLLREVVKPAAVLSK                GEIVVKNNNPNESVTANAATNSSSCTRE                LSWTPMGYV
        caccatgcgctgtagatccagggacgggtta                ggaggaaaacagtgagaggaattttaag                tttacagtg
        aaacaggctaccccatcttgattacccttca   gt     ag    gatttaaaacaactccacccacccgcg    gt     ag   atcgcctgat
        gaacggatcctctcctttaaaaaaatagaag                taaggattcatatatttttctttataa                gatgaagttt
                                                                                                            

Query   VRQTLSTELSAAPKNVTSMINLKTIASSADPKNVSIPSSEALSSDPSYNKEKHIIHPTQK <---Intron---> SKASQGSDLEQNEASRKNKKKKEK
        |||||||||| |||||||||||||||||||||||||||||||||| ||||||||/||||| <   3748nt   > |||||||||||||||||/||||||
Target  VRQTLSTELSPAPKNVTSMINLKTIASSADPKNVSIPSSEALSSDRSYNKEKHIVHPTQK                SKASQGSDLEQNEASRKSKKKKEK
        gccattagctcgcaagataaataaagttggcaagaacttggtttgcttaagacagccaca                tagtcgagcgcaggtaaaaaaaga
        tgactccatccccaatccttatactccccacaatgtcccactccagcaaaaaattaccaa   gt     ag    caccaggataaaaccgagaaaaaa
        tagaataagaactattttgacagcttaaattatttaattatatgttcccaaacttttcag                taaaatcctaatacaagtgagaaa
                                                                                                            

Query   STSKYEVLTVQEPPRIE <---Intron---> DAEEFPNLAVASERRDRIETPKFQSKQQPQ <---Intron---> DNFKNNVKKSQLPVQLDLGGM
        | ||||||||||||||| <   1333nt   > |||||||||||||||||||||||||||||| <   1546nt   > |||/||||||||||||||||/
Target  SISKYEVLTVQEPPRIE                DAEEFPNLAVASERRDRIETPKFQSKQQPQ                DNFRNNVKKSQLPVQLDLGGV
        tatatggcagcgccaag                ggggtcacgggtgaagaagacatctacccc                gataaagaaacccgccgtggg
        ctcaaattctaaccgta   gt     ag    acaatcatctccaggagtaccatacaaaca   gt     ag    aatgaataagatctatatggt
        taaatacgatagtagta                tcgatccgatataaacaaaagatgtagaag                tttactaggcgtagggtggcg
                                                                                                            

Query   LTALEKKQHSQHAKQSSKPVVVSV <---Intron---> GAVPVLSKECASGERGRRMSQMKTPHNPLDSSAPLMKKGKQREIPKAKKPTSLKK <---
        |||||||||||||||||||||||| <   5764nt   > ||||||||||||||||||/|||||||||||||||||||||||||||||||||||| <   
Target  LTALEKKQHSQHAKQSSKPVVVSV                GAVPVLSKECASGERGRRVSQMKTPHNPLDSSAPLMKKGKQREIPKAKKPTSLKK     
        cagcgaacctccgacttacgggtg                gggcgctagtgtggagccgacaaaccactgtagccaaagacagacagaacatcaa     
        tcctaaaaacaacaaccactttc    gt     ag   tgctcttcaagccgaggggtgataccaactacgccttaagaagatcacaaccctaa   gt
        gacgggggctgtaggccaagaca                taagactcaatgaggacctgtaggcactcgccccggggagggggccgcggacaggg     
                                                                                                            

Query   Intron---> IILKERQERK-QRLQENAVSPAFTSDDTQDGESGGDDQFPEQAELSG <---Intron---> PEGMDELISTPSVEDKSEEPPGTELQ
        1043nt   > |||||||||| ||||||||||||||||||||||||||| ||||| || <   1545nt   > |||||| ||| //  |||||||||||
Target             IILKERQERKQQRLQENAVSPAFTSDDTQDGESGGDDQVPEQAEASG                PEGMDEPISTSAIVGKSEEPPGTELQ
                   aatagccgaacccccgaggacgtaaggacgggaggggcgcgcgggtg                cggaggcatatgaggatggccgagcc
             ag    tttaagaagaaagtaaactgcctcgaacaagagggaaatcaacacc    gt     ag   gcagtaactccccttgacaaccgcata
                   ttgaagagagggtcaattgtattcttcaatagttttcgtcggagca                gagggcagccttgtgcgtagaacaacg
                                                                                                            

Query   RDTEASHLAPNHTTFPKIHSRRFRD <---Intron---> YCSQMLSKEVDACVTDLLKELVRFQDRMYQKDPVKAKTKRRLVLGLREVLKHLKLKKLK
        |||||||||||| |||||||||||| <   705nt    > |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  RDTEASHLAPNHATFPKIHSRRFRD                YCSQMLSKEVDACVTDLLKELVRFQDRMYQKDPVKAKTKRRLVLGLREVLKHLKLKKLK
        agaggtccgcacgatcaacacatag                ttacacaaggggtgagccagcgctcgcatcagcgagaaacccgtgtaggcaccacaaca
        gacaccatccaacctcatagggtga   gt     ag    aggattgaatacgtcattaattgtaagtaaaactacacaggtttgtgattaatataata
        gcagcccttctcccctgccccacg                tcccggttaagttttccacaagctcactgcgatacgcgtatatgggggatcacggcaaga
                                                                                                            

Query   CVIISPNCEKIQSKG <---Intron---> GLDDTLHTIIDYACEQNIPFVFALNRKALGRSLNKAVPVSVVGIFSYDGAQ <---Intron---> DQ
        ||||||||||||||| <   6516nt   > ||||||||||||||||||||||||||||||||||||||||||||||||||| <   433nt    > ||
Target  CVIISPNCEKIQSKG                GLDDTLHTIIDYACEQNIPFVFALNRKALGRSLNKAVPVSVVGIFSYDGAQ                DQ
        tgaatcatgaactag                gcggatcaaagtgtgcaactgtgcacagcgcataaggcgagggatatgggc                gc
        gtttccagaataca    gt     ag   ggtaactacttaacgaaatctttctagactgggtaactctgttgttgaagca   gt     ag    aa
        tctttcctggagaa                tggtctgcattttctggctctgttcccatggctgtgattccgagcccctgcg                tg
                                                                                                            

Query   FHKMVELTVAARQAYKTMLENVQQELVGEPRPQAPPSLPTQGPSCPAEDGPPALKEKEEPHYI <---Intron---> EIWKKHLEAYSGCTLELEESL
        ||||||||/||||||||||||||||| |||||||||| |||||||||||||||| |||||||| <   545nt    > ||||||||||| | |||||||
Target  FHKMVELTMAARQAYKTMLENVQQELAGEPRPQAPPSPPTQGPSCPAEDGPPALTEKEEPHYI                EIWKKHLEAYSPCALELEESL
        tcaaggcaaggccgtaaacgagccgcgggcaccgccaccacgcatcggggccgcagaggccta                gataaccggtactgcgcggtt
        taattatctccgacaacttaataaatcgacgcacccgcccagcggccaagccctcaaaacaa    gt     ag   tatgaaatacagcgctataact
        ccggtggaggcaggcgcgggtggggggaacgtgatccgcagcccctaatccacgaaaagacc                tacgaatgaactatcggagacg
                                                                                                            

Query   EASTSQMMNLNL
        ||||||||||||
Target  EASTSQMMNLNL
        ggtatcaaatat
        accccattatat
        gtactaggtgta
                    
------- positions -------
Exon 1    99814066     99814101
Exon 2    99815187     99815332
Exon 3    99820396     99820645
Exon 4    99820863     99821004
Exon 5    99823671     99823897
Exon 6    99828368     99828449
Exon 7    99829987     99830195
Exon 8    99833944     99834066
Exon 9    99835400     99835489
Exon 10   99837036     99837168
Exon 11   99842933     99843099
Exon 12   99844143     99844281
Exon 13   99845827     99845980
Exon 14   99846686     99846906
Exon 15   99853423     99853577
Exon 16   99854011     99854203
Exon 17   99854749     99854849

-------- features -------
None
--------- 3' seq --------
Total sequence length available downstream >= 6000
Sequence until first stop codon: 
TGA
 *