Command line: [exonerate -m p2g --showtargetgff -q SBP2_2.fa.U_to_X -t gi|511782575|gb|CM001959.1|.fastasubseq]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00001329_2.0 # Protein # SECIS binding protein 2 (SBP2) # Macaque (Macaca mulatta) 
        Target: gi|511782575|gb|CM001959.1|:subseq(11849163,200425) Chlorocebus sabaeus isolate 1994-021 chromosome 18, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 228
   Query range: 635 -> 769
  Target range: 100025 -> 100425

    636 : ArgPheArgGluTyrCysAsnGlnValLeuCysLysGluIleAspGluCysValThrL :    655
          !:! !!|||!!:  !|||!:!! !  !|||  !:!!|||!!:!!:!  ||||||||| 
          GlnValArgAspProCysSerProArgLeuAspGluGluMetGluAlaCysValThrA
 100026 : CAGGTTCGGGATCCCTGCAGCCCAAGGCTCGATGAGGAAATGGAAGCCTGTGTGACTG : 100083

    656 : eu-LeuLeuGlnGluLeuValSerPheGlnGluArgIleTyrGlnLysAspProValA :    674
           !#||||||||| !!|||||| !!|||! !!!:|||!!:! !||||||||||||!.!!
          la#LeuLeuGln***LeuValProPheLeuAspArgMetCysGlnLysAspProAlaL
 100084 : CACCTGCTTCAATAACTGGTTCCTTTCCTAGACCGTATGTGCCAGAAAGATCCAGCCA : 100141

    675 : rgAlaLysAlaArgArgArgLeuValMetGlyLeuArgGluValThrLysHisMetLy :    693
          :!.!!|||.!!!:! !! !!||||||   |||||||||!!:|||  !||||||:!!:!
          ysThrLysThrLysGly***LeuVal***GlyLeuArgAspValPheLysHisLeuGl
 100142 : AAACCAAGACCAAAGGCTGACTTGTGTAAGGACTGAGAGACGTTTTCAAACATCTGGA : 100198

    694 : sLeuAsnLysIleLysCysValIleIleSerProAsnCysGluLysIleGlnSerLys :    712
          !|||!!.|||:!:||||||   ||||||||||||!..||||||! !:!:!!.!!!|||
          uLeuLysLysLeuLysCys---IleIleSerProArgCysGluIleValHisArgLys
 100199 : GCTGAAAAAGTTGAAATGC---ATCATTTCTCCCAGATGTGAGATAGTGCACAGGAAA : 100252

    713 : GlyGlyLeuAspGluAlaLeuTyrAsnValIleAlaMetAlaArgGluGlnGluIleP :    732
          |||||||||!  !!:::!:!!:!!! !..!|||  !   ! ! !!||||||...  !|
          GlyGlyLeuGlyAspSerValHisIleThrIleAsnAspAsp***GluGlnSerSerP
 100253 : GGTGGGCTAGGGGACAGTGTGCACATCACCATTAATGATGACTGAGAGCAGAGCTCTC : 100312

    733 : roPheValPheAlaLeuGlyArgLysAlaLeuGlyArgCysValAsnLysLeuValPr :    751
          |||||||||||||||||..!!.!||||||||| !! !!  !  !!..|||! !:!!! 
          roPheValPheAlaLeuAsnHisLysAlaLeuArgGlyVal***ArgLysGlnIleLe
 100313 : CTTTTGTGTTTGCTCTCAACCACAAAGCTCTGCGAGGAGTTTGAAGAAAGCAGATCCT : 100369

    752 : oValSerValValGlyIlePheAsnTyrPheGlyAlaGluSerLeuPheAsnLys :    769
          !  !:!!  !  !|||||||||!:!|||  !||||||  !..!! !||| !!|||
          uSerAlaTrpTrpGlyIlePheSerTyrHisGlyAlaLeuAsp***PheTyrLys
 100370 : GTCAGCGTGGTGGGGAATCTTCAGCTACCATGGGGCCCTGGACTAATTTTACAAG : 100425

vulgar: SPP00001329_2.0 635 769 . gi|511782575|gb|CM001959.1|:subseq(11849163,200425) 100025 100425 + 228 M 20 60 F 0 1 M 44 132 G 1 0 M 69 207
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-21
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|511782575|gb|CM001959.1|:subseq(11849163,200425)	exonerate:protein2genome:local	gene	100026	100425	228	+	.	gene_id 1 ; sequence SPP00001329_2.0 ; gene_orientation .
gi|511782575|gb|CM001959.1|:subseq(11849163,200425)	exonerate:protein2genome:local	cds	100026	100425	.	+	.	
gi|511782575|gb|CM001959.1|:subseq(11849163,200425)	exonerate:protein2genome:local	exon	100026	100425	.	+	.	insertions 0 ; deletions 1 ; frameshifts 1
gi|511782575|gb|CM001959.1|:subseq(11849163,200425)	exonerate:protein2genome:local	similarity	100026	100425	228	+	.	alignment_id 1 ; Query SPP00001329_2.0 ; Align 100026 636 60 ; Align 100087 656 132 ; Align 100219 701 207
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis