Output_id:  SBP2.22.pseudo
----------  --------------
-Species        Chlorocebus sabaeus                          -Taxid 60711
-Target         /home/U73970/luke/Selenoprofiles/selenoprofiles_3_installation/genome_linked/genome.fa
-Chromosome (+) gi|511782575|gb|CM001959.1|
-Program        exonerate
-Query name     gi|83779010|ref|NP_076982.3| SECIS binding protein 2 [Homo sapiens] gi|52788293|sp|Q96T21.2|SEBP2_HUMAN RecName: Full=SECIS-binding protein 2_ AltName: Full=Selenocysteine insertion sequence-binding protein 2 gi|66347402|emb|CAI41364.2| SECIS binding pro
-Query range    12-854     length:854   coverage: 0.99
-Profile range  164-1503   length:1503  coverage: 0.89
-ASI:           0.2008     (ignoring gaps: 0.3371)
-AWSIc:         0.4275     Z-score: -1.283
-AWSIw:         0.4873     Z-score: -1.44
-State          kept

------- alignment -------
Query   EGIKLSADVKPFVPRFAGLNVAWLESSEACVFPSSAATYYPFVQEPPVTEQKIYTEDMAFGASTFPPQYLSSEITLHPYAYSPYTLDSTQNVYSVPGS !
        /| | | |||||||| ||  ||| |||| ||||/ |||/  || |  |||||||/||/| |||||||| ||||||||||||| /|||||||  | | / !
Target  QGCKSSVDVKPFVPRLAGFKVAWSESSEECVFPNCAATHCLFVPESGVTEQKIYSEDIALGASTFPPQNLSSEITLHPYAYS-FTLDSTQNACSAP-A  
        cgtattgggactgcatggtaggttgttggtgtcatggactctgcgtggagcaattggagtggtatcccatttgaaccctgtt-tacgtacagttgc-g  
        aggacctatacttcgtcgtatcgcaccaagttcagcccagtttcacgtcaaatacaatctgccctccaatccatctacacac-tctaccaacgccc-c  
        actgaaatcacttcaatgcggagagcaaatcctctacactattagaagaggaatgatacaatatcatgtattgatttatctt-tctctaattcaat-c  
                                                                                                            

Query    FRAME ! QYLYNQPSCYRGFQTVKHRNENTCPLPQEMKALFKKKTYDEKKTYDQQKFDSERADGTISSEIKSARGSHHLSIYAENSLKSDG <---In
         SHIFT ! || ||| |||/|||||| / // |   //  // /    /|||  |/|||| /||||||||| || / |||  |/||/|||||| <   28
Target    2nt    QYEYNQLSCYQGFQTVKLQKDSMCHFHKKQNSV*ETNDEEEKKKCDEQKFDGKRADGTISSETKSTKHSHH*CIHAEDSLKSDG       
                 ctgtaccattcgtcagaccagtatctcaacatgtgaaggggaaatggcatggaagggaattgaataactccttacgggatatgg       
           cc    aaaaaatggaagtactataaactgataaaaactaacaaaaaaaagaaaatagagcagctccacaccaacaaagtacaagtaca    at  
                 gtgtcacttcattaaggcagtcgctccgaacttaaattggaaagttgagtctagttacaatgaaatatactgcttcgttgaat        
                                                  X                                     X                   

Query   tron---> YHKRTDRKSRIIAKNVSTSKPEFEFTTLDFPELQGAE-NNMSEIQKQPKWGPVHSVSTDISLLREVVKPAAVLSKGEIVVKNN-PNESVTA
        6nt    >   |/|     /    / //| ||||  ||||/||  | |||||||||||||  /|  |// ||||||| | /  /|| ||||| ||||/|/
Target           NKKQTGNTEPLQKVGLPSTKSEFEFIRLDFPQLQDPENNNMSEIQKQPKWGSGYSTRTNVCLLREVVKSADMFLEGERVVKNNYPNESITS
                 aaacagaagcccaggcctaatgtgtaatgtccccgcgaaaatgacaccatgtgttacaagtccagggatggattgggaggaaatcagtaat
           ag   gaaaacgacactaatgtcccacatattgtatcataacaaaatcataaacaggcgaccgcatgttgattaccatttagagttaaaacaactcc
                ccaaaaataaagaaatttccacatatcgatttaaatagcttgagaaggcggagccccccttttcaaggaatcgcagtaaggacttatatatc
                                                                                                            

Query   NAATNSPSCTRELSWTPMGYVVRQTLSTELSAAPKNVTSMINLKTIAS ! FRAME ! SADP--KNVSIPSSEALSSDPSYNKEKHIIHPTQKSKASQG
        ||||||||||| /  |  |  / ||    ||  ||| |||/|  |    ! SHIFT ! // |  | ||/   / ||  || || |||||  / |/||  
Target  NAATNSPSCTRVILDT-SGDAIWQT*LIALSPIPKNGTSMLNPGTYED    4nt    ASSPDPKVVSV*FFQVLSLVPSCNKGKHIIHHVKMSEASHA
        aggaatcttaagacga-agggatcatcagctcacaagatacacgatgg           gttcgcaggagtttcgtttgcttaagacaaccgaatggtcg
        acccacccgcgtttac-ggactgacattctcctcaagccttacgcaaa    aatt   ccccacattgtattattcttccgaagaattaatatcaccac
        tttccctccagtcgcc-tttttgggataagtactatttcgacaactac           taaattatttaattatatattctcaaacttctgagtaaatt
                                 X                                            X                             

Query   SDLEQNEASRKNKKKKEK <---Intron---> STSKYEVLTVQEPPRIEDAEEFPNLAVASERRDRIETPKFQSKQQPQDNFKNNVKKSQLPVQLDLG
        |/||||||||/ ||||/| <    41nt    >      //|  || ||||| /||||/   ||||/   | |||||||| /|| | /||||/ |/| ||
Target  SNLEQNEASRRRKKKKKK                -----QLLIAQESPRIEDVKEFPNMTATSERRES*VT-KFQSKQQPWNNFLNGLKKSQISVRLGLG
        aacgcaggtaaaaaaaaa                -----cccagcgtcaagggagtcaaagatgaagatga-atctaccctaattagtaaacatgctgtg
        gataaaaccgggaaaaaa   ga     ta    -----atttcaaccgtaataatcatccccaggaggtc-atacaaacgaattagtaagatctgtgtg
        cctaatacaggaaaaaga                -----acgacagaaatatcggtccgatctaaagtacc-atataggagtttattaggcgtaaagtgg
                                                                            X                               

Query   GMLTALEKKQHSQHA <---Intron---> KQSSKPVVVSVGAVPVLSKECASGERGRRMSQMKTPHNPLDSSAPLMKKGKQREIPKAKKPTSLKKIIL
         || ///|/|||| | <    70nt    >                                   /|| ||  | || |||| || ||||||||| ||/|
Target  KMLRSMKKQQHSQRA                ----------------------------------SPHKPLHHSNPLKKKGKAREAPKAKKPTSL-KIML
        aacataaaccctccg                ----------------------------------tccactccaactaaagagaggcagaacatc-aaat
        attgctaaaaacagc   ta     gc    ----------------------------------ccaactaagactaaagacgaccacaaccct-attt
        agggagagggcggta                ----------------------------------cgcgcgcccccgggggagggtcgcggacaa-gtgg
                                                                                                            

Query    ! FRAME ! KERQERKQRLQENAVSPAFTSDDTQDGESG <---Intron---> GDDQFPEQAELSGPEGMDELISTPSVEDKSEEPPGTELQRDTE
         ! SHIFT ! |  / /// ||||| |||| | / |    | <    89nt    >                                         /  
Target      1nt    KHSETKQKHLQENARSPAFGSYNAQSQGGG                ----------------------------------------EGR
                   acagaacacccgagaacgtgatagcacggg                ----------------------------------------ggc
             c     aagacaaaataaacggcctggaacagaggg   cc     ca    ----------------------------------------agg
                   gttgagggtcaatcgcattctttaataata                ----------------------------------------gac
                                                                                                            

Query   ASHLAPNHTTFPKIHSRRFRDYCSQMLSKEVDACVTDLLKELVRFQDRMYQKDPVKAKTKRRLVLGLREVLKHLKLKKLKCVIISPNCEKIQSKGGLDDT
         | |||||/ | || | ||    /|   //       ||/ || | ||| |||| | |||  || |||/| |||/|||||| |||| || /  |||| |/
Target  CSFLAPNHSAFAKIQSCRFGIPAAQGSMRKWKPV*LHLLQ*LVPFLDRMCQKDPAKTKTKG*LV*GLRDVFKHLELKKLKC-IISPRCEIVHRKGGLGDS
        tatcgcactgtgaacatatgacggcgtaaatacgtccccctcgctcgcatcagcgaaaaagtcgtgcaggtaccgcaatat-aatcatgagcaaggcgga
        ggttccaacctcatagggtgtcccagctgagactgtattaattcttagtgaaaccacacaggttagtgattaatataatag-ttccggattagaggtgag
        cccttccctctcgtgccgcgctacacgggaggtgagcgtaagttcactgcgatacacgcacatgaagactcatgggaggac-cttcatgagcgatgagct
                                          X     X                    X  X                                   

Query   LHTIIDYACEQNIPFVFALNRKALGRSLNKAVPVSVVGIFSYDGAQDQFHK <---Intron---> MVELTVAARQAYKTMLENVQQELVGEPRPQAPP
        /|  |/   ||/ ||||||| |||     | /  /  ||||| || | |/| <    61nt    >                                  
Target  VHITINDD*EQSSPFVFALNHKALRGV*RKQILSAWWGIFSYHGALD*FYK                ---------------------------------
        gcaaaaggtgcatctgtgcacagccggtaacactgttgatatcggcgttta                ---------------------------------
        tatctaaagaagcctttctaaactggtggaattccgggttgaagctaataa   ag     tc    ---------------------------------
        gccctttcaggctttgttcccatgaataaggcgagggacccctgcgcatcg                ---------------------------------
                X                  X                   X                                                    

Query   SLPTQGPSCPAEDGPPAL ! FRAME ! KEKEEPHYIEIWK ! FRAME ! KHLEAYSGCTLELEESLEASTSQMMNLNL
              || |    | || ! SHIFT ! //|/||| /|/|| ! SHIFT ! ||||  /   |/|/|||/|||||||||||
Target  -----NPSSPLHKAPAAL    4nt    RQKKEPHSMELWK    2nt    KHLEVTN*SALKLQESLKASTSQMMNLNL
        -----actactcagcggc           acaagcctagcta           accggaattgcaccgttagtatcaaatat
        -----accgctaacccct    caga   gaaaacactatga     ta    aatatcagcctataactaccccattatat
        -----cctcagcgtattg           agaaaaccgacga           atgacccatgagaaacggtaccgggcgta
                                                                    X                     
------- positions -------
Exon 1    11947089     11947376
Exon 2    11947379     11947628
Exon 3    11947915     11948330
Exon 4    11948335     11948511
Exon 5    11948553     11948777
Exon 6    11948848     11948949
Exon 7    11948951     11949040
Exon 8    11949130     11949588
Exon 9    11949650     11949688
Exon 10   11949693     11949731
Exon 11   11949734     11949820

-------- features -------
None
--------- 3' seq --------
Total sequence length available downstream >= 6000
Sequence until first stop codon: 
TAA
 *