Output_id:  SPS.1.selenocysteine
----------  --------------------
-Species        Chlorocebus sabaeus                          -Taxid 60711
-Target         /home/U73970/luke/Selenoprofiles/selenoprofiles_3_installation/genome_linked/genome.fa
-Chromosome (-) gi|511782588|gb|CM001945.1|
-Program        genewise
-Query name     gi|168480154|ref|NP_001108204.1| selenophosphate synthetase 2 [Bos taurus]
-Query range    1-450      length:451   coverage: 1.0
-Profile range  343-1323   length:1325  coverage: 0.74    sec_position: [551]
-ASI:           0.3259     (ignoring gaps: 0.3886)
-AWSIc:         0.669     Z-score: 0.671
-AWSIw:         0.6729     Z-score: 0.676
-State          kept

------- alignment -------
Query   MAEVAATGAGGEAMAAVAAGEGSSGPVGLPQGRGFSSYRPFEPQALGLSPSWRLTGFSGMKGUGCKVPQETLLKLLAGLTRPEVLPAPGRGLVGGLEETA
        ||| /|||| ||||||/|| |||||| ||  |||||/|||||||||||||||||||||||||||||||||||||||||||||/| |  ||||||| || /
Target  MAEASATGACGEAMAAMAAAEGSSGPAGLTVGRGFSNYRPFEPQALGLSPSWRLTGFSGMKGUGCKVPQETLLKLLAGLTRPDVRPQLGRGLVGGQEEAS
        agggtgaggtgggaggagggggttgcggtaggcgttatcctgccgtgcacatccagttgaagtgtagccgaccaccggcaccggccccgcgcgggcgggt
        tcaccccgcggactcctcccagccgccgtctgggtcaagctacactgtgcgggtcgtcgtaggggatcaacttattcgtcgcatgcatgggttggaaacc
        ggacgggcctaggggagaagaccgcggcgtgcgccgccgccgcgggcccgcggggccccggcaccgcgggggcacggaggggcggcggcgcggccgaggc
                                                                      *                                     

Query   QEAGLPVRAEPSPPFPTLGIGMDSCVIPLRHGGLSLVQTTDFFYPLVEDPYMMGRIACANVLSDLYAMGITECDNMLMLLSVSQSMPEEEREKITPLMIK
        ||||/|  |  || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||/||||/|
Target  QEAGMPTGAGSSPTFPALGIGMDSCVIPLRHGGLSLVQTTDFFYPLVEDPYMMGRIACANVLSDLYAMGITECDNMLMLLSVSQSMSEEEREKVTPLMVK
        cgggacagggtacatcgcgagagttgaccacggctcgcaagtttctgggctaagcagtgagcagctgagaagtgaatatcagacaaagggcgagaccaga
        aacgtccgcgcgcctcctgtgtacgttctgaggtcttaccattacttaacattggtcgcattgatactgtcagaatttttgtgagtgaaagaatccttta
        gaccgaaagccccctacgccggctccacggcgcgaggacgcctccggatccgggcattccggtccccggttgtccgggaccccgtgtggacagagacgca
                                                                                                            

Query   GFRDAAEEGGTAVTGGQTVVNPWIIIGGVATVVCQPNEFILPDSAVVGDVLVLTKPLGTQVAVNAHQWLDNPERWNKIKMVVSREEVELGYQEAMFNMAT
        ||||||||||||||||||||||||||||||||||||||||/||||||||||||||||||||||||||||||||||||/||||||||||| ||||||||||
Target  GFRDAAEEGGTAVTGGQTVVNPWIIIGGVATVVCQPNEFIMPDSAVVGDVLVLTKPLGTQVAVNAHQWLDNPERWNKVKMVVSREEVELAYQEAMFNMAT
        gtcgggggggaggaggcaggactaaaggggaggtccagtaacgaggggggcgtaactgacgggagcctcgacgataagaaggtaggggcgtcggataaga
        gtgaccaaggcctcggacttacgtttggtccttgacaatttcagcttgattttcactgcatctacaagtaacaggaatatttcgaatatcaaacttatcc
        ctgtcggaaggagttgaggcctgtactatctgacgatgcaggctcctgcgggacaaaacgttctgcaggtttaagtaaggaccaaggggctgacgctgtc
                                                                                                            

Query   LNRIAAGLMHTFNAHAATDITGFGILGHSQNLAKQQRNEVSFVIHNLPIIAKMAAISKASGRFGLLQGTSAETSGGLLICLPREQAARFCSEIKSSKYGE
        ||| |||||||||||||||||||||||||||||||||||||||||||||||||||/||||||||||||||||||||||||||||||||||||||||||||
Target  LNRTAAGLMHTFNAHAATDITGFGILGHSQNLAKQQRNEVSFVIHNLPIIAKMAAVSKASGRFGLLQGTSAETSGGLLICLPREQAARFCSEIKSSKYGE
        caaagggtacatagcggagaagtgacgctcacgaccaaggttgacaccaagaagggaagagctgcccgatggatggtcatccagcggctttgaattatgg
        tagcccgttactacacccatcgtgttgacaatcaaagaatctttaatcttcatcctgacgggtgttagcccaccggtttgtcgaaccgtgcataccaaga
        ccattatagcattctacatcactctgaccgctaaaaatagttttttggatcggtcccgctagtgttaacatactgaagttgaaaggtcttcacaccgcag
                                                                                                            

Query   GHQAWIVGIVEKGNRTARIIDKPRVIEVLPRGATATPLVPENSSASSEPS-
        |||||||||||||||||||||||||||||||||||  | |//|/|||||| 
Target  GHQAWIVGIVEKGNRTARIIDKPRVIEVLPRGATAAALAPDSSNASSEPSS
        gccgtaggaggagacagcaagaccgaggcccggagggcgcgatagttgcat
        gaacgttgttaagagccgttaacgttattcggccccctccagcacccacgc
        tcaggctctgagacagcgctcggattacattgcattttttctatcctgtcg
                                                           
------- positions -------
Exon 1    27130853     27132205

-------- features -------
None
--------- 3' seq --------
Total sequence length available downstream >= 6000
Sequence until first stop codon: 
TGA
 *