Command line: [exonerate -m p2g --showtargetgff -q SPS_2.fa.U_to_X -t gi|511782588|gb|CM001945.1|.fastasubseq]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00001336_2.0 # Protein # Selenophosphate synthetase (SPS) # Macaque (Macaca mulatta) 
        Target: gi|511782588|gb|CM001945.1|:subseq(27031405,200755) Chlorocebus sabaeus isolate 1994-021 chromosome 5, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 881
   Query range: 6 -> 244
  Target range: 100758 -> 99999

      7 : ValAlaMetAlaAlaAlaGluValSerSerGlyProAlaAlaLeuSerLeuGlyTrpA :     26
          !.!||||||||||||||||||! !|||||||||||||||!.!|||!!!:!!||| !!!
          AlaAlaMetAlaAlaAlaGluGlySerSerGlyProAlaGlyLeuThrValGlyArgG
 100758 : GCGGCAATGGCAGCAGCGGAAGGCTCCTCGGGCCCGGCGGGCTTGACTGTGGGCCGGG : 100701

     27 : laPheSerSerTyrTrpProPheGlnProGlnLeuTrpGlyLeuSerLeuGlyTrpAr :     45
          .!||||||!:!||| !!||||||:!!||||||  !! !|||||||||! !.!!|||||
          lyPheSerAsnTyrArgProPheGluProGlnAlaLeuGlyLeuSerProSerTrpAr
 100700 : GCTTCTCGAACTACCGGCCCTTCGAGCCCCAGGCGTTGGGCCTCAGCCCGAGCTGGCG : 100644

     46 : gLeuThrGlyPheSerGlyArgLysGlyUnkGlyCysLysValSerGlnGluAlaLeu :     64
          |||||||||||||||||||! !||||||   |||||||||||| !!||||||.!!|||
          gLeuThrGlyPheSerGlyMetLysGly***GlyCysLysValProGlnGluThrLeu
 100643 : GCTGACGGGCTTCTCCGGCATGAAGGGCTGAGGCTGCAAGGTCCCGCAGGAGACGCTG : 100587

     65 : ProLysLeuLeuAlaArgLeuThrArgProGlu  >>>> Target Intron 1 >> :     76
          ! !|||||||||||| !!||||||||||||!!:            45 bp        
          LeuLysLeuLeuAlaGlyLeuThrArgProAsp++                       
 100586 : CTCAAACTCCTGGCGGGACTGACGCGGCCGGACgt....................... : 100549

     77 : >>  AlaAlaGlnGluAlaProLeuProGluGlyAlaAspProGlyProAlaLeuPro :     93
              |||:!!|||||||||  !:!!|||  !||||||! ! !!.!!|||.!!!!!|||
            ++AlaSerGlnGluAlaGlyMetProThrGlyAlaGlySerSerProThrPhePro
 100548 : ..agGCGTCCCAGGAAGCCGGCATGCCAACAGGAGCGGGCTCCAGCCCCACCTTTCCA : 100455

     94 : ValLeuGlyIleGlyIleAspProCysValIleLeuLeuArgHisGlyGlyLeuSerL :    113
          !.!||||||||||||!!:||| !!|||||||||! !||||||||||||||||||||||
          AlaLeuGlyIleGlyMetAspSerCysValIleProLeuArgHisGlyGlyLeuSerL
 100454 : GCCCTGGGCATCGGGATGGACTCTTGCGTCATACCCCTGAGGCACGGGGGCCTGTCAC : 100395

    114 : euValGlnThrMetAspPhePheTyrProLeuValGluAspProTyrMetMetGlyCy :    132
          |||||||||||! !|||||||||||||||||||||||||||||||||||||||||| !
          euValGlnThrThrAspPhePheTyrProLeuValGluAspProTyrMetMetGlyAr
 100394 : TGGTGCAAACCACGGACTTCTTTTACCCCTTGGTGGAAGATCCCTACATGATGGGGCG : 100338

    133 : sIleAlaCysAlaSerValLeuSerAspLeuUnkAlaMetGlyIleThrLysCysAsp :    151
          !||||||||||||!:!|||||||||||||||   |||||||||||||||:!!||||||
          gIleAlaCysAlaAsnValLeuSerAspLeuTyrAlaMetGlyIleThrGluCysAsp
 100337 : CATAGCTTGTGCCAACGTGCTGAGTGACCTCTACGCCATGGGGATTACTGAGTGTGAC : 100281

    152 : AsnMetLeuThrLeuLeuSerLeuSerGlnSerMetSerGluGluGluHisGluLysI :    171
          |||||||||! !|||||||||:!!||||||||||||||||||||||||!.!||||||:
          AsnMetLeuMetLeuLeuSerValSerGlnSerMetSerGluGluGluArgGluLysV
 100280 : AACATGTTGATGTTACTCAGCGTCAGCCAGAGTATGAGTGAGGAGGAACGCGAAAAGG : 100221

    172 : leMetProLeuMetIleLysGlyPheArgAspAlaThrGluGluGlyGlyThrAlaVa :    190
          !!! !|||||||||:!!||||||||||||||||||.!!||||||||||||||||||||
          alThrProLeuMetValLysGlyPheArgAspAlaAlaGluGluGlyGlyThrAlaVa
 100220 : TAACGCCACTCATGGTCAAAGGCTTTCGGGATGCCGCGGAGGAAGGAGGGACGGCAGT : 100164

    191 : lThrGlyGlyGlnMetValValSerSerTrpLeuIleIleGlyGlyValAlaThrVal :    209
          |||||||||||||! !||||||!:! !!|||:!!||||||||||||||||||||||||
          lThrGlyGlyGlnThrValValAsnProTrpIleIleIleGlyGlyValAlaThrVal
 100163 : GACTGGTGGGCAAACGGTGGTCAACCCTTGGATTATAATCGGTGGAGTTGCCACTGTG : 100107

    210 : ValTyrArgProSerAlaPheIleMetProAsnAsnAlaAlaValGlyAspValLeuV :    229
          |||! !!:!|||!:!! !||||||||||||:!!!:!|||!.!||||||||||||||||
          ValCysGlnProAsnGluPheIleMetProAspSerAlaValValGlyAspValLeuV
 100106 : GTATGCCAGCCAAATGAGTTCATAATGCCGGACAGTGCCGTCGTTGGGGACGTGCTGG : 100047

    230 : alLeuThrLysProLeuGlyThrGlnValAlaValAsnAlaHisGln :    244
          |||||||||||||||||||||||||||||||||||||||||||||||
          alLeuThrLysProLeuGlyThrGlnValAlaValAsnAlaHisGln
 100046 : TGTTAACCAAACCATTAGGAACCCAGGTTGCTGTCAATGCGCACCAA : 100000

vulgar: SPP00001336_2.0 6 244 . gi|511782588|gb|CM001945.1|:subseq(27031405,200755) 100758 99999 - 881 M 69 207 5 0 2 I 0 41 3 0 2 M 169 507
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-06
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|511782588|gb|CM001945.1|:subseq(27031405,200755)	exonerate:protein2genome:local	gene	100000	100758	881	-	.	gene_id 1 ; sequence SPP00001336_2.0 ; gene_orientation +
gi|511782588|gb|CM001945.1|:subseq(27031405,200755)	exonerate:protein2genome:local	cds	100552	100758	.	-	.	
gi|511782588|gb|CM001945.1|:subseq(27031405,200755)	exonerate:protein2genome:local	exon	100552	100758	.	-	.	insertions 0 ; deletions 0
gi|511782588|gb|CM001945.1|:subseq(27031405,200755)	exonerate:protein2genome:local	splice5	100550	100551	.	-	.	intron_id 1 ; splice_site "GT"
gi|511782588|gb|CM001945.1|:subseq(27031405,200755)	exonerate:protein2genome:local	intron	100507	100551	.	-	.	intron_id 1
gi|511782588|gb|CM001945.1|:subseq(27031405,200755)	exonerate:protein2genome:local	splice3	100507	100508	.	-	.	intron_id 0 ; splice_site "AG"
gi|511782588|gb|CM001945.1|:subseq(27031405,200755)	exonerate:protein2genome:local	cds	100000	100506	.	-	.	
gi|511782588|gb|CM001945.1|:subseq(27031405,200755)	exonerate:protein2genome:local	exon	100000	100506	.	-	.	insertions 0 ; deletions 0
gi|511782588|gb|CM001945.1|:subseq(27031405,200755)	exonerate:protein2genome:local	similarity	100000	100758	881	-	.	alignment_id 1 ; Query SPP00001336_2.0 ; Align 100759 7 207 ; Align 100507 76 507
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis