Command line: [exonerate -m p2g --showtargetgff -q SPS_2.fa.U_to_X -t gi|511782564|gb|CM001970.1|.fastasubseq]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00001336_2.0 # Protein # Selenophosphate synthetase (SPS) # Macaque (Macaca mulatta) 
        Target: gi|511782564|gb|CM001970.1|:subseq(11870171,200542) Chlorocebus sabaeus isolate 1994-021 chromosome 29, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 366
   Query range: 88 -> 218
  Target range: 100389 -> 99999

     89 : GlyProAlaLeuProValLeuGlyIleGlyIleAspProCysValIleLeuLeuArgH :    108
          ||| !!!.!  !|||  !||||||||||||!!:||| !!|||||||||! !|||||||
          GlyAlaValThrProArgLeuGlyIleGlyMetAspThrCysValIleProLeuArgH
 100389 : GGAGCCGTTACGCCAAGGCTTGGCATTGGAATGGATACTTGTGTCATTCCTTTGAGGC : 100332

    109 : isGlyGlyLeuSerLeuValGlnThrMetAspPhePheTyrProLeuValGluAspPr :    127
          ||||||||||||||||||||||||||!  |||!:!.!!|||! !:!!:!!.!.:!!||
          isGlyGlyLeuSerLeuValGlnThrThrAspTyrIleTyrArgIleIleAsnAsnPr
 100331 : ACGGTGGGCTTTCCTTGGTTCAAACCACAGATTACATTTACCGGATCATAAACAACCC : 100275

    128 : oTyrMetMetGlyCysIleAlaCysAlaSerValLeuSerAspLeuUnkAlaMetGly :    146
          |! !:!!|||||| ! |||||| !!|||!:!!.!!!!|||||||||   |||||||||
          oSerValMetGlyArgIleAlaArgAlaAsnAlaPheSerAspLeuTyrAlaMetGly
 100274 : TTCCGTGATGGGCAGGATAGCACGTGCCAACGCCTTCAGTGACCTCTACGCAATGGGA : 100218

    147 : IleThrLysCysAspAsnMetLeuThrLeuLeuSerLeuSerGlnSerMetSerGluG :    166
          :!!||| ! |||||||||||||||! !||||||.!!:!!|||.!.!.!:!!!!!!!:.
          ValThrAspCysAspAsnMetLeuMetLeuLeuGlyValSerAsnLysValThrAspA
 100217 : GTCACAGATTGTGACAATATGCTGATGCTCCTTGGAGTCAGTAATAAAGTGACCGACA : 100158

    167 : luGluHisGluLysIleMetProLeuMetIleLysGlyPheArgAspAlaThrGluGl :    185
          .!|||...!!:|||!!:||| !!|||:!:|||:!!||||||!:!||||||.!!|||||
          rgGluArgAspLysMetMetSerLeuValIleGlnGlyPheLysAspAlaAlaGluGl
 100157 : GGGAAAGGGATAAAATGATGTCTCTGGTTATCCAGGGTTTTAAAGACGCAGCTGAGGA : 100101

    186 : uGlyGlyThrAlaValThrGlyGlyGlnMetValValSerSerTrpLeuIleIleGly :    204
          |!.!|||! !:!!|||||||||||||||!  :!!:!!!:! !!  !:!!  !:!:|||
          uAlaGlyMetSerValThrGlyGlyGlnThrIleLeuAsnProMetIleAlaLeuGly
 100100 : AGCAGGAATGTCTGTAACGGGCGGCCAAACCATACTAAACCCCATGATTGCCCTGGGA : 100044

    205 : GlyValAlaThrValValTyrArgProSerAlaPheIleMet :    218
          |||:!!||||||..!|||! !!:!|||!:!! !! !||||||
          GlyIleAlaThrThrValCysGlnProAsnGluCysIleMet
 100043 : GGAATTGCTACCACTGTCTGTCAGCCCAATGAATGTATCATG : 100000

vulgar: SPP00001336_2.0 88 218 . gi|511782564|gb|CM001970.1|:subseq(11870171,200542) 100389 99999 - 366 M 130 390
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-06
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|511782564|gb|CM001970.1|:subseq(11870171,200542)	exonerate:protein2genome:local	gene	100000	100389	366	-	.	gene_id 1 ; sequence SPP00001336_2.0 ; gene_orientation .
gi|511782564|gb|CM001970.1|:subseq(11870171,200542)	exonerate:protein2genome:local	cds	100000	100389	.	-	.	
gi|511782564|gb|CM001970.1|:subseq(11870171,200542)	exonerate:protein2genome:local	exon	100000	100389	.	-	.	insertions 0 ; deletions 0
gi|511782564|gb|CM001970.1|:subseq(11870171,200542)	exonerate:protein2genome:local	similarity	100000	100389	366	-	.	alignment_id 1 ; Query SPP00001336_2.0 ; Align 100390 89 390
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis