Command line: [exonerate -m p2g --showtargetgff -q SPS_2.fa.U_to_X -t gi|511782583|gb|CM001950.1|.fastasubseq]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00001336_2.0 # Protein # Selenophosphate synthetase (SPS) # Macaque (Macaca mulatta) 
        Target: gi|511782583|gb|CM001950.1|:subseq(85049815,200623) Chlorocebus sabaeus isolate 1994-021 chromosome 10, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 498
   Query range: 88 -> 244
  Target range: 100152 -> 100623

     89 : GlyProAlaLeuProValLeuGlyIleGlyIleAspProCysValIleLeuLeuArgH :    108
          ||| !!!.!:!!|||  !|||! !||| !!!!:||| !!|||||||||! !|||||||
          GlyAlaValMetProArgLeuAspIleArgMetAspThrCysValIleProLeuArgH
 100153 : GGAGCCGTTATGCCAAGGCTTGACATTAGAATGGACACTTGTGTCATTCCTTTGAGGC : 100210

    109 : isGlyGlyLeuSerLeuValGlnThrMetAspPhePheTyrProLeuVal<->GluAs :    126
          ||||||||! !|||||||||||||||!  |||!:!.!!||||||:!!|||   |||||
          isGlyGlyArgSerLeuValGlnThrThrAspTyrIleTyrProIleValGluGluAs
 100211 : ACGGTGGGCGTTCCTTGGTTCAAACCACAGATTACATTTACCCGATCGTAGAAGAAGA : 100267

    127 : pProTyrMetMetGlyCysIleAlaCysAlaSerValLeuSerAspLeuUnkAlaMet :    145
          ||||||||||!  ||| ! |||||| !!|||!:!||||||||||||!!!   |||:!!
          pProTyrMetThrGlyArgIleAlaSerAlaAsnValLeuSerAspPheTyrAlaVal
 100268 : CCCTTACATGACAGGCAGGATAGCAAGTGCCAATGTCCTCAGTGACTTCTATGCAGTG : 100324

    146 : GlyIleThrLysCysAspAsnMetLeuThrLeuLeuSerLeuSerGlnSerMetSerG :    165
          |||:!!|||||||||||||||||||||! !||||||.!!:!!|||.!.!.!|||!!!!
          GlyValThrLysCysAspAsnMetLeuMetLeuLeuGlyValSerAsnLysMetThrA
 100325 : GGGGTCACGAAATGTGACAATATGCTGATGCTCCTTGGAGTCAGTAATAAAATGACTG : 100384

    166 : luGluGluHisGluLysIleMetProLeuMetIleLysGlyPheArgAspAlaThrGl :    184
          !:..!|||   !!:|||:!:|||||||||!!:! !:!!! !|||!:!||||||.!!||
          spArgGluGlyAspLysValMetProLeuIleAsnGlnAspPheLysAspAlaAlaGl
 100385 : ACAGGGAAGGGGATAAAGTGATGCCTCTGATTAACCAAGATTTTAAAGATGCAGCTGA : 100441

    185 : uGluGlyGlyThrAlaValThrGlyGlyGlnMetValValSerSerTrpLeuIleIle :    203
          ||||!.!||||||:!!|||||||||||||||!  |||:!!!:! !!|||:!!:!!:!:
          uGluAlaGlyThrSerValThrGlyGlyGlnThrValLeuAsnProTrpIleValLeu
 100442 : AGAAGCAGGAACGTCTGTAACCGGCGGCCAAACAGTACTAAACCCCTGGATTGTCCTG : 100498

    204 : GlyGlyValAlaThrValValTyrArgProSerAlaPheIleMetProAsnAsnAlaA :    223
          |||||||||||||||..!|||! !!:!||||||! !||||||||||||:!!|||.!!!
          GlyGlyValAlaThrThrValCysGlnProSerGluPheIleMetProAspAsnThrV
 100499 : GGAGGAGTCGCTACCACTGTCTGCCAGCCCAGTGAATTTATCATGCCAGACAATACAG : 100558

    224 : laValGlyAspValLeuValLeuThrLysProLeuGlyThrGlnValAlaValAsnAl :    242
          .!  !||||||||||||||||||||||||||||||||||||||||||||||||  !!.
          alProGlyAspValLeuValLeuThrLysProLeuGlyThrGlnValAlaValAlaVa
 100559 : TGCCAGGAGACGTGCTGGTGTTGACAAAACCCCTGGGGACACAGGTGGCAGTGGCTGT : 100615

    243 : aHisGln :    244
          !||||||
          lHisGln
 100616 : GCACCAG : 100623

vulgar: SPP00001336_2.0 88 244 . gi|511782583|gb|CM001950.1|:subseq(85049815,200623) 100152 100623 + 498 M 36 108 G 0 3 M 120 360
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-06
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|511782583|gb|CM001950.1|:subseq(85049815,200623)	exonerate:protein2genome:local	gene	100153	100623	498	+	.	gene_id 1 ; sequence SPP00001336_2.0 ; gene_orientation .
gi|511782583|gb|CM001950.1|:subseq(85049815,200623)	exonerate:protein2genome:local	cds	100153	100623	.	+	.	
gi|511782583|gb|CM001950.1|:subseq(85049815,200623)	exonerate:protein2genome:local	exon	100153	100623	.	+	.	insertions 3 ; deletions 0
gi|511782583|gb|CM001950.1|:subseq(85049815,200623)	exonerate:protein2genome:local	similarity	100153	100623	498	+	.	alignment_id 1 ; Query SPP00001336_2.0 ; Align 100153 89 108 ; Align 100264 125 360
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis