genewise output
Score 525.58 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00001330_2.0   33 RSFSNYRPFEPQALGLSPSWRLTGFSGMKGXGCKVPQETLLKLLAGLTR 
                     R++S    F P++  L  S+RLT F+ +KG+GCKVPQ+ L KLL  L   
                     RTMSTRESFNPESYELDKSFRLTRFTELKGTGCKVPQDVLQKLLESL-- 
gi|511782584|-125838 aaatacgttacgatgtgaatccaatagcagagtagccggccatcgtt   
                     gctccgactacagaataagtgtcgtcatagcggatcaattaattact   
                     acgtgggctcgatcagcaccgacactaggcaccagcatcgaaggata   


SPP00001330_2.0   82 PDVRPQLGRGLVGGQEEASQEAGMPTGAGSSPTFPAL             
                                   QE   QE  +  GA     +P L             
                     --------------QENHFQEDEQFLGA----VMPRL             
gi|511782584|-125697               cgactcgggctcgg    gacac             
                                   aaaataaaaattgc    ttcgt             
                                   agcccaatggcgac    tgagt             


SPP00001330_2.0  119                           IGMDSCVIPLRHGGLSLVQTTDF 
                                               IGMD+CVIPLRHGGLSLVQTTD+ 
                               G:G[ggc]        IGMDTCVIPLRHGGLSLVQTTDY 
gi|511782584|-125640 GGTAGGTA  Intron 1   CAGGCagagatgactacggcttgcaagt 
                      <1-----[125639:11954-1>  tgtacgttctgaggtcttaccaa 
                                               tagtttcttggctgtcgtacatc 


SPP00001330_2.0  143 FYPLVEDPYMM                       GRIACANVLSDLYAM 
                     +YP+V+DPYMM                       GRIACANVLSDLYAM 
                     IYPIVDDPYMM                       GRIACANVLSDLYAM 
gi|511782584|-119469 atcagggctaaGTAAGCA  Intron 2   CAGgaagtgagcagctga 
                     tacttaacatt<0-----[119436:11708-0>ggtcgcattgatact 
                     tcgcacctcgg                       cgaatctcctcccag 


SPP00001330_2.0  169 GITECDNMLMLLSVSQSMSEE                       EREKV 
                     G+TECDNMLMLL VS  M++                        ER+KV 
                     GVTECDNMLMLLGVSNKMTDR                       ERDKV 
gi|511782584|-117035 ggagtgaacaccggaaaaagaGTAAGTA  Intron 3   TAGgagag 
                     gtcagaatttttgtgaatcag<0-----[116972:11502-0>agaat 
                     gcgatctgggctacttagtcg                       agtag 


SPP00001330_2.0  195 TPLMVKGFRDAAEEGGTAVTGGQTVVNPWIIIGGVATVVCQPN--EFIM 
                      PL+++GF+DAAEE GT+VTGGQTV+NPWI++GGVAT VCQ+    ++  
                     MPLIIQGFKDAAEEAGTSVTGGQTVLNPWIVLGGVATTVCQxxxxDLLT 
gi|511782584|-115009 accaacgtagggggggatgaggcagcactagcggggaagtccNNNgcca 
                     tctttagtaaccaacgcctcggacttacgtttggtccctgacNNNattc 
                     gtgtcattacatgaaagtagccaaaaccgtcgaattctctgNNNNtcgc 


SPP00001330_2.0  242                           PDSAVVGDVLVLTKPLGTQVAVN 
                                               PD+AV GDVLVLTKPLGTQVAV  
                                -:S[tcg]       PDNAVPGDVLVLTKPLGTQVAVA 
gi|511782584|-114862 TCGTGATCC  Intron 4   CAGGcgaggcgggcgtaaccgacgggg 
                       <2-----[114860:11001-2> caactcgattttcactgcatctc 
                                               gctaaagtggggaacggaggagt 


SPP00001330_2.0  265 AHQWLDN                       PERWNKVKMVVSREEVELA 
                      HQWLD                        PE+WNK+K+VV++E+VELA 
                     VHQWLDI                       PEKWNKIKLVVTQEDVELA 
gi|511782584|-109945 gcctcgaGTGAGTA  Intron 5   TAGcgataaaacggacggggcg 
                     taagtat<0-----[109924:10848-0>caagaatatttcaaatatc 
                     gcgggtt                       tgagtgcaagccaacaggc 


SPP00001330_2.0  291 YQEAMFNMATLNRTAAGLMHTFNAHAATDITGFGILGHSQNLAKQQRNE 
                     YQEAM+NMA LNRTAAGLMHTFNAHAAT IT  GILGH++NLAKQQRNE 
                     YQEAMMNMARLNRTAAGLMHTFNAHAATAIT--GILGHAENLAKQQRNE 
gi|511782584|-108425 tcggaaaagacaaagggcacatagcggagaa  gatgcggacgaccaag 
                     aaacttatcgtagcccgttactacacccctc  gttgacaatcaaagaa 
                     cggaggcgggccgataacgcgctccgcacca  gtgccagcgcggggcg 


SPP00001330_2.0  340 VSFVIHNLPVIAKMAAVSKASGR-FGLLQGTSAETSGGLLI         
                     VSFVIHNLPV+AKMAAV KA G  FGL+ GT  ETSGGLLI         
                     VSFVIHNLPVLAKMAAVHKACGNMFGLMHGTCPETSGGLLI         
gi|511782584|-108284 gttgacaccgcgaagggcagtgaatgcacgatcgatggcca         
                     tctttaatcttcatcctaacggattgttagcgcaccggttt         
                     gatatcccgggcggtggtgccacgcccgcgccggcacctgc         


SPP00001330_2.0  380                           ----CLPREQAARFCSEIKSSKY 
                                                   CLPREQAARFC+EIKS KY 
                               -:C[tgc]        GLLICLPREQAARFCAEIKSPKY 
gi|511782584|-108161 TGTTTACC  Intron 6   CAGGCgccattccgcggcttggaatcat 
                      <1-----[108160:10017-1>  gtttgtcgaaccgtgcataccaa 
                                               ctgctaatgaatgctagagccat 


SPP00001330_2.0  399 GEGHQAWIVGIVEKGNRTARIIDKPRVIEVLPRGAT              
                     GEGHQAWI+GIVEKGNRTARIIDKPR+IEV P+ AT              
                     GEGHQAWIIGIVEKGNRTARIIDKPRIIEVAPQVAT              
gi|511782584|-100107 gggccgtaagaggagacagaaagaccaagggccgga              
                     gagaacgttgttaagagccgttaacgttatccatcc              
                     taccaagttgtaggcccacacacacgccgcaaagct              


//
Making a G in phase 1 intron
Making a S in phase 2 intron
Making a C in phase 1 intron
>gi|511782584|gb|CM001949.1|:subseq(13249704,219541).pep
RTMSTRESFNPESYELDKSFRLTRFTELKGTGCKVPQDVLQKLLESLQENHFQEDEQFLG
AVMPRLGIGMDTCVIPLRHGGLSLVQTTDYIYPIVDDPYMMGRIACANVLSDLYAMGVTE
CDNMLMLLGVSNKMTDRERDKVMPLIIQGFKDAAEEAGTSVTGGQTVLNPWIVLGGVATT
VCQxxxxDLLTSPDNAVPGDVLVLTKPLGTQVAVAVHQWLDIPEKWNKIKLVVTQEDVEL
AYQEAMMNMARLNRTAAGLMHTFNAHAATAITGILGHAENLAKQQRNEVSFVIHNLPVLA
KMAAVHKACGNMFGLMHGTCPETSGGLLICGLLICLPREQAARFCAEIKSPKYGEGHQAW
IIGIVEKGNRTARIIDKPRIIEVAPQVAT
//
>gi|511782584|gb|CM001949.1|:subseq(13249704,219541).[125838:99998].sp
AGAACCATGTCTACGCGGGAGTCCTTTAACCCGGAAAGTTACGAATTGGACAAAAGCTTC
CGGCTAACCAGATTCACTGAACTGAAGGGCACAGGCTGCAAAGTGCCCCAAGATGTCCTG
CAAAAATTGCTGGAATCTTTACAAGAGAACCACTTCCAAGAAGATGAGCAGTTCCTGGGA
GCCGTTATGCCAAGGCTTGGCATTGGAATGGATACTTGTGTCATTCCTTTGAGGCACGGT
GGGCTTTCCTTGGTTCAAACCACAGATTACATTTACCCGATCGTAGACGACCCTTACATG
ATGGGCAGGATAGCATGTGCCAATGTCCTCAGTGACCTCTACGCAATGGGGGTCACGGAA
TGTGACAATATGCTGATGCTCCTTGGAGTCAGTAATAAAATGACTGACAGGGAAAGGGAT
AAAGTGATGCCTCTGATTATCCAAGGTTTTAAAGACGCAGCTGAGGAAGCAGGAACGTCT
GTAACGGGCGGCCAAACAGTACTAAACCCCTGGATTGTCCTGGGAGGAGTTGCTACCACT
GTCTGTCAGCCNNNNNNNNNNGATCTCCTGACCTCGCCGGACAATGCAGTACCAGGGGAT
GTGCTGGTGTTGACAAAACCCCTGGGGACACAGGTGGCAGTGGCTGTGCACCAGTGGCTG
GATATTCCTGAGAAATGGAATAAGATCAAACTAGTGGTCACCCAAGAAGACGTAGAGCTG
GCCTACCAGGAGGCAATGATGAACATGGCGAGGCTCAACAGGACAGCTGCAGGACTCATG
CACACGTTCAATGCCCACGCGGCCACAGCCATCACAGGGATTTTGGGCCACGCAGAGAAC
CTGGCCAAGCAGCAGAGGAACGAGGTGTCATTTGTAATTCACAACCTCCCGGTGCTGGCC
AAGATGGCTGCGGTGCATAAGGCCTGCGGAAACATGTTCGGCCTCATGCACGGGACCTGC
CCGGAGACCTCAGGCGGCCTTCTGATCTGCGGCCTTCTGATCTGTTTACCACGTGAGCAA
GCAGCTCGGTTCTGTGCAGAGATAAAGTCCCCCAAATATGGTGAAGGCCACCAAGCATGG
ATTATTGGGATTGTAGAGAAGGGCAACCGCACAGCCAGAATCATAGACAAACCCCGGATC
ATCGAGGTCGCACCACAAGTGGCCACT
//
gi|511782584|gb|CM001949.1|:subseq(13249704,219541)	GeneWise	match	125838	100000	548.54	-	.	gi|511782584|gb|CM001949.1|:subseq(13249704,219541)-genewise-prediction-1
gi|511782584|gb|CM001949.1|:subseq(13249704,219541)	GeneWise	cds	125838	125640	0.00	-	0	gi|511782584|gb|CM001949.1|:subseq(13249704,219541)-genewise-prediction-1
gi|511782584|gb|CM001949.1|:subseq(13249704,219541)	GeneWise	intron	125639	119541	0.00	-	.	gi|511782584|gb|CM001949.1|:subseq(13249704,219541)-genewise-prediction-1
gi|511782584|gb|CM001949.1|:subseq(13249704,219541)	GeneWise	cds	119540	119437	0.00	-	2	gi|511782584|gb|CM001949.1|:subseq(13249704,219541)-genewise-prediction-1
gi|511782584|gb|CM001949.1|:subseq(13249704,219541)	GeneWise	intron	119436	117081	0.00	-	.	gi|511782584|gb|CM001949.1|:subseq(13249704,219541)-genewise-prediction-1
gi|511782584|gb|CM001949.1|:subseq(13249704,219541)	GeneWise	cds	117080	116973	0.00	-	0	gi|511782584|gb|CM001949.1|:subseq(13249704,219541)-genewise-prediction-1
gi|511782584|gb|CM001949.1|:subseq(13249704,219541)	GeneWise	intron	116972	115025	0.00	-	.	gi|511782584|gb|CM001949.1|:subseq(13249704,219541)-genewise-prediction-1
gi|511782584|gb|CM001949.1|:subseq(13249704,219541)	GeneWise	cds	115024	114861	0.00	-	0	gi|511782584|gb|CM001949.1|:subseq(13249704,219541)-genewise-prediction-1
gi|511782584|gb|CM001949.1|:subseq(13249704,219541)	GeneWise	intron	114860	110016	0.00	-	.	gi|511782584|gb|CM001949.1|:subseq(13249704,219541)-genewise-prediction-1
gi|511782584|gb|CM001949.1|:subseq(13249704,219541)	GeneWise	cds	110015	109925	0.00	-	1	gi|511782584|gb|CM001949.1|:subseq(13249704,219541)-genewise-prediction-1
gi|511782584|gb|CM001949.1|:subseq(13249704,219541)	GeneWise	intron	109924	108483	0.00	-	.	gi|511782584|gb|CM001949.1|:subseq(13249704,219541)-genewise-prediction-1
gi|511782584|gb|CM001949.1|:subseq(13249704,219541)	GeneWise	cds	108482	108161	0.00	-	0	gi|511782584|gb|CM001949.1|:subseq(13249704,219541)-genewise-prediction-1
gi|511782584|gb|CM001949.1|:subseq(13249704,219541)	GeneWise	intron	108160	100179	0.00	-	.	gi|511782584|gb|CM001949.1|:subseq(13249704,219541)-genewise-prediction-1
gi|511782584|gb|CM001949.1|:subseq(13249704,219541)	GeneWise	cds	100178	100000	0.00	-	2	gi|511782584|gb|CM001949.1|:subseq(13249704,219541)-genewise-prediction-1
//