Command line: [exonerate -m p2g --showtargetgff -q SPS_1.fa.U_to_X -t gi|511782570|gb|CM001964.1|.fastasubseq]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00001330_2.0 # Protein # Selenophosphate synthetase (SPS) # Macaque (Macaca mulatta) 
        Target: gi|511782570|gb|CM001964.1|:subseq(78102667,200209) Chlorocebus sabaeus isolate 1994-021 chromosome 23, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 203
   Query range: 255 -> 327
  Target range: 100209 -> 99999

    256 : ProLeuGlyThrGlnValAlaValAsnAlaHisGlnTrpLeuAspAsnProGluArgT :    275
          |||||||||.!!|||||||||:!!  !!.!|||||||||||||||! !! !:!!    
          ProLeuGlyAlaGlnValAlaMetAlaValHisGlnTrpLeuAspIleLeuLys----
 100209 : CCTCTGGGGGCACAAGTGGCAATGGCTGTGCACCAGTGGCTGGATATTCTGAAA---- : 100155

    276 : rpAsnLysValLysMetValValSerArgGluGluValGluLeuAlaTyrGlnGluAl :    294
            |||:!!  !|||:!:||||||! !!:!!!:!  |||:!!|||  !|||  !:!!||
          --AsnGluLysLysLeuValValIleGlnAspAlaValGlnLeuMetTyr***LysAl
 100154 : --AATGAAAAAAAATTAGTAGTCATCCAAGATGCTGTACAATTAATGTACTGAAAAGC : 100101

    295 : aMetPheAsnMetAlaThrLeuAsnArgThrAlaAlaGlyLeuMetHisThrPheAsn :    313
          |:!!.!.||||||!.!  !|||||||||! !|||||||||:!!:!!||||||||||||
          aLeuMetAsnMetValArgLeuAsnArgArgAlaAlaGlyIleValHisThrPheAsn
 100100 : ATTGATGAACATGGTCCGGCTCAACAGGAGAGCTGCAGGAATCGTGCACACGTTCAAT : 100044

    314 : AlaHisAlaAlaThrAspIleThrGlyPheGlyIleLeuGly :    327
          |||||||||||||||||||||||||||||||||:!!  !|||
          AlaHisAlaAlaThrAspIleThrGlyPheGlyValThrGly
 100043 : GCCCACGCAGCCACTGACATCACTGGCTTCGGGGTCACAGGT : 100000

vulgar: SPP00001330_2.0 255 327 . gi|511782570|gb|CM001964.1|:subseq(78102667,200209) 100209 99999 - 203 M 18 54 G 2 0 M 52 156
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-06
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|511782570|gb|CM001964.1|:subseq(78102667,200209)	exonerate:protein2genome:local	gene	100000	100209	203	-	.	gene_id 1 ; sequence SPP00001330_2.0 ; gene_orientation .
gi|511782570|gb|CM001964.1|:subseq(78102667,200209)	exonerate:protein2genome:local	cds	100000	100209	.	-	.	
gi|511782570|gb|CM001964.1|:subseq(78102667,200209)	exonerate:protein2genome:local	exon	100000	100209	.	-	.	insertions 0 ; deletions 2
gi|511782570|gb|CM001964.1|:subseq(78102667,200209)	exonerate:protein2genome:local	similarity	100000	100209	203	-	.	alignment_id 1 ; Query SPP00001330_2.0 ; Align 100210 256 54 ; Align 100156 276 156
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00001330_2.0 # Protein # Selenophosphate synthetase (SPS) # Macaque (Macaca mulatta) 
        Target: gi|511782570|gb|CM001964.1|:subseq(78102667,200209) Chlorocebus sabaeus isolate 1994-021 chromosome 23, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 113
   Query range: 180 -> 235
  Target range: 100414 -> 100249

    181 : SerValSerGlnSerMetSerGluGluGluArgGluLysValThrProLeuMetValL :    200
          |||!.!|||||||||   .!!     !!  ! !...:::  !.!!! !|||!!:  !:
          SerAlaSerGlnSerAlaGlyIleIleGlyLeuSerArgHisAlaGlnLeuIleArgG
 100414 : TCGGCCTCCCAAAGTGCTGGGATTATAGGTCTGAGCCGCCACGCCCAGCTGATTAGAC : 100357

    201 : ysGlyPheArgAspAlaAlaGluGluGlyGlyThrAlaValThrGlyGlyGlnThrVa :    219
          !!!.!|||!:!! !.!!|||||||||!.!|||! !:!!||||||..!|||||||||||
          lnAlaPheLysAlaThrAlaGluGluAlaGlyIleSerValThrAsnGlyGlnThrVa
 100356 : AGGCTTTTAAAGCCACAGCAGAAGAAGCAGGAATATCTGTAACCAATGGCCAAACAGT : 100300

    220 : lValAsnProTrpIleIleIleGlyGlyValAlaThrValValCysGln :    235
          |:!!||| !!|||:!!:!!:!:|||||||||.!!|||..!..!..!|||
          lLeuAsnSerTrpValValLeuGlyGlyValThrThrThrThrAlaGln
 100299 : ATTAAACTCCTGGGTTGTTTTGGGAGGAGTCACTACAACTACAGCTCAA : 100250

vulgar: SPP00001330_2.0 180 235 . gi|511782570|gb|CM001964.1|:subseq(78102667,200209) 100414 100249 - 113 M 55 165
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-06
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|511782570|gb|CM001964.1|:subseq(78102667,200209)	exonerate:protein2genome:local	gene	100250	100414	113	-	.	gene_id 2 ; sequence SPP00001330_2.0 ; gene_orientation .
gi|511782570|gb|CM001964.1|:subseq(78102667,200209)	exonerate:protein2genome:local	cds	100250	100414	.	-	.	
gi|511782570|gb|CM001964.1|:subseq(78102667,200209)	exonerate:protein2genome:local	exon	100250	100414	.	-	.	insertions 0 ; deletions 0
gi|511782570|gb|CM001964.1|:subseq(78102667,200209)	exonerate:protein2genome:local	similarity	100250	100414	113	-	.	alignment_id 2 ; Query SPP00001330_2.0 ; Align 100415 181 165
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis