Command line: [exonerate -m p2g --showtargetgff -q SPS_1.fa.U_to_X -t gi|511782572|gb|CM001962.1|.fastasubseq]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00001330_2.0 # Protein # Selenophosphate synthetase (SPS) # Macaque (Macaca mulatta) 
        Target: gi|511782572|gb|CM001962.1|:subseq(1844956,200767) Chlorocebus sabaeus isolate 1994-021 chromosome 21, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 733
   Query range: 115 -> 309
  Target range: 100095 -> 100677

    116 : ProAlaLeuGlyIleGlyMetAspSerCysValIleProLeuArgHisGlyGlyLeuS :    135
          |||  !||||||||||||||||||!!!||||||! !||||||||||||.!!|||||||
          ProArgLeuGlyIleGlyMetAspThrCysValSerProLeuArgHisSerGlyLeuS
 100096 : CCAAGGCTTGGCATTGGAATGGATACTTGTGTCAGTCCTTTGAGACACAGTGGGCTTT : 100153

    136 : erLeuValGlnThrThrAspPhePheTyrProLeuValGluAspProTyrMetMetGl :    154
          |||||||||||! !||||||!:!.!!|||! !:!!|||!!:||| !!|||||||||||
          erLeuValGlnIleThrAspTyrIleTyrLeuIleValAspAspSerTyrMetMetGl
 100154 : CCTTGGTTCAAATCACAGATTACATTTACCTGATCGTAGACGACTCTTACATGATGGG : 100210

    155 : yArgIleAlaCysAlaAsnValLeuSerAspLeuTyrAlaMetGlyIleThrGluCys :    173
          ||||||||||||||||||||||||||||||||||||||||!!:|||:!!|||||||||
          yArgIleAlaCysAlaAsnValLeuSerAspLeuTyrAlaIleGlyValThrGluCys
 100211 : CAGGATAGCATGTGCCAATGTCCTCAGTGACCTCTATGCAATAGGGGTCACGGAATGT : 100267

    174 : AspAsnMetLeuMetLeuLeuSerValSerGlnSerMetSerGluGluGluArgGluL :    193
          ! !||||||||||||||||||!!!|||!:!.!.!.!|||! !!!:..!||||||!!:|
          GlyAsnMetLeuMetLeuLeuArgValAsnAspLysMetIleAspArgGluArgAspL
 100268 : GGCAATATGCTGATGCTCCTTAGAGTCAATGATAAAATGATCGACAGGGAAAGAGATA : 100327

    194 : ysValThrProLeuMetValLysGlyPheArgAspAlaAlaGluGluGlyGlyThrAl :    212
          |||||! !! !|||!!::!!:!!||||||!:!|||||||||||| !!  !||||||:!
          ysValMetLeuLeuIleIleGlnGlyPheLysAspAlaAlaGlu***ThrGlyThrSe
 100328 : AAGTGATGCTTCTGATTATCCAAGGTTTTAAAGATGCAGCTGAATAAACAGGAACATC : 100384

    213 : aValThrGlyGlyGlnThrValValAsnProTrpIleIleIleGlyGlyValAlaThr :    231
          !|||||||||.!!|||||||||:!!||||||||||||:!!:!:|||||||||||||||
          rValThrGlySerGlnThrValLeuAsnProTrpIleValLeuGlyGlyValAlaThr
 100385 : TGTAACAGGCAGCCAAACAGTACTAAACCCCTGGATTGTCCTGGGAGGAGTCGCTACC : 100441

    232 : ValValCysGlnProAsnGluPheIleMetProAspSerAlaValValGlyAspValL :    251
          ..!||||||||||||!:!||||||||||||||||||!:!||||||  !||||||||||
          ThrValCysGlnProSerGluPheIleMetProAspAsnAlaValProGlyAspValL
 100442 : ACTGTCTGCCAGCCCAGTGAATTTATCATGCCAGACAATGCAGTGCCAGGGGACGTGC : 100501

    252 : euValLeuThrLysProLeuGlyThrGlnValAlaValAsnAlaHisGlnTrpLeuAs :    270
          ||||||||||||||||||||||||||||||||||||||  !!.!||||||||||||||
          euValLeuThrLysProLeuGlyThrGlnValAlaValAlaValHisGlnTrpLeuAs
 100502 : TGGTGTTGACAAAACCCCTGGGGACACAGGTGGCAGTGGCTGTGCACCAGTGGCTGGA : 100558

    271 : pAsnProGluArgTrpAsnLysValLysMetValValSerArgGluGluValGluLeu :    289
          |! !||||||!:!|||||||||:!!|||:!:||||||!!!!:!|||!!:|||||||||
          pIleProGluLysTrpAsnLysIleLysLeuValValThrGlnGluAspValGluLeu
 100559 : TATTCCTGAGAAATGGAATAAGATTAAACTAGTGGTCACCCAAGAAGATGTGGAGCTG : 100615

    290 : AlaTyrGlnGluAlaMetPheAsnMetAlaThrLeuAsnArgThrAlaAlaGlyLeuM :    309
          |||||||||:!!!.!:!!.!.||||||!.!! !||||||||||||!.!!.!  !|||!
          AlaTyrGlnLysValValMetAsnMetGlyArgLeuAsnArgThrGlyGlyLeuLeuI
 100616 : GCCTACCAGAAGGTGGTGATGAACATGGGGAGGCTCAACAGGACAGGCGGCCTTCTGA : 100675

    310 : et :    309
          !:
          le
 100676 : TC : 100677

vulgar: SPP00001330_2.0 115 309 . gi|511782572|gb|CM001962.1|:subseq(1844956,200767) 100095 100677 + 733 M 194 582
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-06
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|511782572|gb|CM001962.1|:subseq(1844956,200767)	exonerate:protein2genome:local	gene	100096	100677	733	+	.	gene_id 1 ; sequence SPP00001330_2.0 ; gene_orientation .
gi|511782572|gb|CM001962.1|:subseq(1844956,200767)	exonerate:protein2genome:local	cds	100096	100677	.	+	.	
gi|511782572|gb|CM001962.1|:subseq(1844956,200767)	exonerate:protein2genome:local	exon	100096	100677	.	+	.	insertions 0 ; deletions 0
gi|511782572|gb|CM001962.1|:subseq(1844956,200767)	exonerate:protein2genome:local	similarity	100096	100677	733	+	.	alignment_id 1 ; Query SPP00001330_2.0 ; Align 100096 116 582
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00001330_2.0 # Protein # Selenophosphate synthetase (SPS) # Macaque (Macaca mulatta) 
        Target: gi|511782572|gb|CM001962.1|:subseq(1844956,200767) Chlorocebus sabaeus isolate 1994-021 chromosome 21, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 197
   Query range: 373 -> 434
  Target range: 100659 -> 100841

    374 : SerGlyGlyLeuLeuIleCysLeuProArgGluGlnAlaAlaArgPheCysSerGluI :    393
          !!!||||||||||||||||||||||||||||||||||||||||||||||||:!!||||
          ThrGlyGlyLeuLeuIleCysLeuProArgGluGlnAlaAlaArgPheCysAlaGluI
 100660 : ACAGGCGGCCTTCTGATCTGTTTACCACGTGAGCAAGCAGCTCGGTTCTGTGCAGAGA : 100717

    394 : leLysSerSerLysTyrGlyGluGlyHisGlnAla--TrpIleValGlyIleValGlu :    411
          |||||||||||!:!! !||||||||||||||||||##   |||:!!||||||||||||
          leLysSerSerArgCysGlyGluGlyHisGlnAla##---IleIleGlyIleValGlu
 100718 : TAAAGTCCTCCAGATGTGGTGAAGGCCACCAAGCATG---ATTATTGGGATTGTAGAG : 100770

    412 : LysGlyAsnArgThrAlaArgIleIleAspLysProArgValIleGluValLeuProA :    431
          |||||||||!.!! !||||||||||||||||||||| !!:!!|||:!!:!!  !|||!
          LysGlyAsnHisIleAlaArgIleIleAspLysProTrpIleIleLysIleAlaProG
 100771 : AAGGGCAACCACATAGCCAGAATCATAGACAAACCCTGGATCATCAAGATCGCACCAC : 100830

    432 : rgGlyAlaThr :    434
          :!! !||||||
          lnValAlaThr
 100831 : AAGTGGCCACT : 100841

vulgar: SPP00001330_2.0 373 434 . gi|511782572|gb|CM001962.1|:subseq(1844956,200767) 100659 100841 + 197 M 31 93 F 0 2 G 1 0 M 29 87
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-06
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|511782572|gb|CM001962.1|:subseq(1844956,200767)	exonerate:protein2genome:local	gene	100660	100841	197	+	.	gene_id 2 ; sequence SPP00001330_2.0 ; gene_orientation .
gi|511782572|gb|CM001962.1|:subseq(1844956,200767)	exonerate:protein2genome:local	cds	100660	100841	.	+	.	
gi|511782572|gb|CM001962.1|:subseq(1844956,200767)	exonerate:protein2genome:local	exon	100660	100841	.	+	.	insertions 0 ; deletions 1 ; frameshifts 2
gi|511782572|gb|CM001962.1|:subseq(1844956,200767)	exonerate:protein2genome:local	similarity	100660	100841	197	+	.	alignment_id 2 ; Query SPP00001330_2.0 ; Align 100660 374 93 ; Align 100755 406 87
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis