Output_id:  SPS.10.pseudo
----------  -------------
-Species        Chlorocebus sabaeus                          -Taxid 60711
-Target         /home/U73970/luke/Selenoprofiles/selenoprofiles_3_installation/genome_linked/genome.fa
-Chromosome (+) gi|511782572|gb|CM001962.1|
-Program        exonerate
-Query name     gi|73949038|ref|XP_857465.1| PREDICTED: similar to selenophosphate synthetase isoform 5 [Canis familiaris]
-Query range    29-397     length:397   coverage: 0.93
-Profile range  551-1232   length:1325  coverage: 0.51    sec_position: [551]
-ASI:           0.2328     (ignoring gaps: 0.3682)
-AWSIc:         0.4161     Z-score: -3.735
-AWSIw:         0.603     Z-score: -0.641
-State          kept

------- alignment -------
Query   UGCKVPQDVLQKLLESLQENHFQEDEQFLGAVMPRLGIGMDTCVIPLRHGGLSLVQTTDYIYPIVDDPYMMGRIACANVLSDLYAMGVTECDNMLMLLGI
         |||||||/||||||||| ||||||||||||| ||||||||||| |||| |||||| ||||| |||| |||||||||||||||||/||||| |||||| /
Target  *GCKVPQDILQKLLESLQANHFQEDEQFLGAVRPRLGIGMDTCVSPLRHSGLSLVQITDYIYLIVDDSYMMGRIACANVLSDLYAIGVTECGNMLMLLRV
        tgtagccgaccatcgttcgactcgggcttgggacacgagagatgactacagcttgcaagtatcagggttaagaagtgagcagctgaggagtgaacaccag
        aggatcaattaattactacaataaaaattgctgcgtgtgtacgtgctgaggtcttatcaatatttaacattggtcgcattgatactgtcaggatttttgt
        accagcatcgaaggataggcccaatgatgactgagtctagtttcttgactgtcgtacatctcgcacctcggcgaatctcctcctaagcgatctgggctac
        X                                                                                                   

Query   SNKMTDRERDKVMPLIIQGFKDAAEEAGTSVTGGQTVLNPWIVLGGVATTVCQPNEFIMPDNAVPGDVLVLTKPLGTQVAVAVHQWLDIKRGGLKIE <-
        //|| |||||||| |||||||||||  |||||| ||||||||||||||||||||/||||||||||||||||||||||||||||||||||     ||/ < 
Target  NDKMIDRERDKVMLLIIQGFKDAAE*TGTSVTGSQTVLNPWIVLGGVATTVCQPSEFIMPDNAVPGDVLVLTKPLGTQVAVAVHQWLDIPEKWNKIK   
        agaaagagagagaccaacgtaggggtagatgagacagcactagcggggaagtccagtaacgaggcgggcgtaaccgacgggggcctcgacgataaaa   
        aaattagagaattttttagtaaccaacgcctcggacttacgtttggtccctgacgatttcaactcgattttcactgcatctctaagtatcaagaata   
        ttagccgaataggtgtcattatataaaaataaccaaaaccgtcgaactctccgctatcgactagagcggggaacggaggagtgcgggtttgagtgta   
                                 X                                                                          

Query   --Intron---> KLHGSASNEAPKTLLAYQEAMMNMARLNRTAAGLMHTFNAHAATDITGFGILGHAQNLAKQQRNEVSFVIHNLPVLAKMAAVSKACG
           72nt    >                                                                                        
Target               ---------------------------------------------------------------------------------------
                     ---------------------------------------------------------------------------------------
        ct     gg    ---------------------------------------------------------------------------------------
                     ---------------------------------------------------------------------------------------
                                                                                                            

Query   NMFGLMHGTCPETSGGLLICLPREQAARFCAEIKSPKYGEGHQA ! FRAME ! WIIGIVEKGNRTARIIDKPRIIEVAPQVATQNVNPTPGATS
                     /||||||||||||||||||||| / |||||| ! SHIFT !  |||||||||  ||||||| ||//|||||||||||||||||
Target  -------------TGGLLICLPREQAARFCAEIKSSRCGEGHQA    2nt    -IIGIVEKGNHIARIIDKPWIIKIAPQVATQNVNPTPGATS
        -------------aggccattccgcggcttggaattatgggccg           -aagaggagacagaaagactaaaagccggacagacacggat
        -------------cggtttgtcgaaccgtgcataccgggagaac     tg    -ttgttaagaatcgttaacgttatccatccaatacccgccc
        -------------acctgctaatgaatgctagagccattaccaa           -ttgtaggcccacacacacgccgcaaagctatgtcatgcct
                                                                                                        
------- positions -------
Exon 1    1944953      1945543
Exon 2    1945616      1945708
Exon 3    1945711      1945830

-------- features -------
None
--------- 3' seq --------
Total sequence length available downstream >= 6000
Sequence until first stop codon: 
TAA
 *