Command line: [exonerate -m p2g --showtargetgff -q SPS_1.fa.U_to_X -t gi|511782562|gb|CM001951.1|.fastasubseq]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00001330_2.0 # Protein # Selenophosphate synthetase (SPS) # Macaque (Macaca mulatta) 
        Target: gi|511782562|gb|CM001951.1|:subseq(129174847,201052) Chlorocebus sabaeus isolate 1994-021 chromosome X, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 627
   Query range: 115 -> 263
  Target range: 100863 -> 100419

    116 : ProAlaLeuGlyIleGlyMetAspSerCysValIleProLeuArgHisGlyGlyLeuS :    135
          |||  !||||||||||||||||||!!!|||||||||||||||||||||||||||||||
          ProArgLeuGlyIleGlyMetAspThrCysValIleProLeuArgHisGlyGlyLeuS
 100863 : CCAAGGCTTGGCATTGGAATGGATACTTGTGTCATTCCTTTGAGGCACGGTGGGCTTT : 100806

    136 : erLeuValGlnThrThrAspPhePheTyrProLeuValGluAspProTyrMetMetGl :    154
          ||||||||||||||||||||!:!.!!||||||:!!|||!!:|||||||||||||||||
          erLeuValGlnThrThrAspTyrIleTyrProIleValAspAspProTyrMetMetGl
 100805 : CCTTGGTTCAAACCACAGATTACATTTACCCGATCGTAGACGACCCTTACATGATGGG : 100749

    155 : yArgIleAlaCysAlaAsnValLeuSerAspLeuTyrAlaMetGlyIleThrGluCys :    173
          |||||||||||||||||||||||||||||||||||||.!!||||||:!!|||||||||
          yArgIleAlaCysAlaAsnValLeuSerAspLeuTyrThrMetGlyValThrGluCys
 100748 : CAGGATAGCATGTGCCAATGTCCTCAGTGACCTCTACACAATGGGGGTCACGGAATGT : 100692

    174 : AspAsnMetLeuMetLeuLeuSerValSerGlnSerMetSerGluGluGluArgGluL :    193
          |||||||||||||||||||||.!!|||.!!.!.!.!|||!!!!!:..!||||||!!:|
          AspAsnMetLeuMetLeuLeuGlyValGlyAsnLysMetThrAspArgGluArgAspL
 100691 : GACAATATGCTGATGCTCCTTGGAGTCGGTAATAAAATGACCGACAGGGAAAGGGATA : 100632

    194 : ysValThrProLeuMetValLysGlyPheArgAspAlaAlaGluGluGlyGlyThrAl :    212
          |||||! !||||||!!::!!:!!||||||!:!|||||||||||||||!.!! !|||:!
          ysValMetProLeuIleIleGlnGlyPheLysAspAlaAlaGluGluAlaGluThrSe
 100631 : AAGTGATGCCTCTGATTATCCAAGGTTTTAAAGACGCAGCTGAGGAAGCAGAAACGTC : 100575

    213 : aValThrGlyGlyGlnThrValValAsnProTrpIleIleIleGlyGlyValAlaThr :    231
          !|||||||||||||||||||||:!!||||||||||||:!!:!:|||||||||||||||
          rValThrGlyGlyGlnThrValLeuAsnProTrpIleValLeuGlyGlyValAlaThr
 100574 : TGTAACAGGTGGCCAAACAGTACTAAACCCCTGGATTGTCCTGGGAGGAGTTGCTACC : 100518

    232 : ValValCysGlnProAsnGluPheIleMetProAspSerAlaValValGlyAspValL :    251
          ..!||||||||||||||||||! !||||||||||||!:!||||||  !|||:!!||||
          ThrValCysGlnProAsnGluCysIleMetProAspAsnAlaValProGlyAsnValL
 100517 : ACTGTCTGTCAGCCCAATGAATGTATCATGCCAGACAATGCAGTGCCAGGGAACGTGT : 100458

    252 : euValLeuThrLysProLeuGlyThrGlnValAlaVal :    263
          |||||||||||||||||||||||||||||! !|||:!!
          euValLeuThrLysProLeuGlyThrGlnGluAlaMet
 100457 : TGGTGTTGACAAAACCCCTGGGGACACAGGAGGCAATG : 100420

vulgar: SPP00001330_2.0 115 263 . gi|511782562|gb|CM001951.1|:subseq(129174847,201052) 100863 100419 - 627 M 148 444
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-06
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|511782562|gb|CM001951.1|:subseq(129174847,201052)	exonerate:protein2genome:local	gene	100420	100863	627	-	.	gene_id 1 ; sequence SPP00001330_2.0 ; gene_orientation .
gi|511782562|gb|CM001951.1|:subseq(129174847,201052)	exonerate:protein2genome:local	cds	100420	100863	.	-	.	
gi|511782562|gb|CM001951.1|:subseq(129174847,201052)	exonerate:protein2genome:local	exon	100420	100863	.	-	.	insertions 0 ; deletions 0
gi|511782562|gb|CM001951.1|:subseq(129174847,201052)	exonerate:protein2genome:local	similarity	100420	100863	627	-	.	alignment_id 1 ; Query SPP00001330_2.0 ; Align 100864 116 444
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00001330_2.0 # Protein # Selenophosphate synthetase (SPS) # Macaque (Macaca mulatta) 
        Target: gi|511782562|gb|CM001951.1|:subseq(129174847,201052) Chlorocebus sabaeus isolate 1994-021 chromosome X, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 557
   Query range: 288 -> 434
  Target range: 100440 -> 99999

    289 : LeuAlaTyrGlnGluAlaMetPheAsnMetAlaThrLeuAsnArgThrAlaAlaGlyL :    308
          |||!.!   ||||||||||||.!.|||||||||! !||||||!:!|||||||||||||
          LeuGlyThrGlnGluAlaMetMetAsnMetAlaArgLeuAsnLysThrAlaAlaGlyL
 100440 : CTGGGGACACAGGAGGCAATGATGAACATGGCAAGGCTCAACAAGACAGCTGCAGGAC : 100383

    309 : euMetHisThrPheAsnAlaHisAlaAlaThrAspIleThrGlyPheGlyIleLeuGl :    327
          ||||||||||||||!:!|||||| !!|||||||||||||||||||||||||||! !||
          euMetHisThrPheSerAlaHisProAlaThrAspIleThrGlyPheGlyIleTrpGl
 100382 : TTATGCACACGTTCAGTGCCCACCCAGCCACTGACATCACGGGCTTCGGGATTTGGGG : 100326

    328 : yHisSerGlnAsnLeuAlaLysGlnGlnArgAsnGluValSerPheValIleHisAsn :    346
          ||||  !|||||||||!.!||||||||||||||||||||||||||||||||||||!:!
          yHisValGlnAsnLeuValLysGlnGlnArgAsnGluValSerPheValIleHisSer
 100325 : CCATGTGCAGAACCTGGTCAAGCAGCAGAGGAACGAGGTGTCGTTTGTAATTCACAGC : 100269

    347 : LeuProValIleAlaLysMetAlaAlaValSerLysAlaSerGlyArg<->PheGlyL :    365
          |||! !|||:!:|||||||||.!!|||||||||||||||!!!|||!.!   |||||||
          LeuLeuValLeuAlaLysMetThrAlaValSerLysAlaCysGlyAsnMetPheGlyL
 100268 : CTCCTGGTGCTGGCCAAGATGACTGCGGTGAGCAAGGCCTGTGGAAACATGTTCGGCC : 100209

    366 : euLeuGlnGlyThrSerAlaGluThrSerGlyGlyLeuLeuIleCysLeuProArgGl :    384
          ||:!!!!.||||||!!! !!||||||||||||||||||||||||||||||||| !!||
          euMetHisGlyThrCysProGluThrSerGlyGlyLeuLeuIleCysLeuProCysGl
 100208 : TCATGCACGGGACCTGCCCAGAGACCTCAGGTGGCCTTCTGATCTGTTTACCATGTGA : 100152

    385 : uGlnAlaAlaArgPheCysSerGluIleLysSerSerLysTyrGlyGluGlyHisGln :    403
          ||||||||||||||||! !:!!|||||||||||| !!|||||||||||||||||||||
          uGlnAlaAlaArgPheTyrAlaGluIleLysSerProLysTyrGlyGluGlyHisGln
 100151 : GCAAGCAGCTCGGTTCTATGCAGAGATAAAGTCCCCCAAATATGGTGAAGGCCACCAA : 100095

    404 : AlaTrpIleValGlyIleValGluLysGlyAsnArgThrAlaArgIleIleAspLysP :    423
          |||||||||:!!|||||||||!!:|||! !|||||||||.!!|||!!:||||||||||
          AlaTrpIleIleGlyIleValAspLysAspAsnArgThrThrArgMetIleAspLysP
 100094 : GCATGGATTATTGGGATTGTAGACAAGGACAACCGCACAACAAGAATGATAGACAAAC : 100035

    424 : roArgValIleGluValLeuProArgGlyAlaThr :    434
          |||||:!!|||||||||  !|||!:!! !||||||
          roArgIleIleGluValAlaProGlnValAlaThr
 100034 : CCCGGATCATCGAGGTCGCACCACAAGTGGCCACT : 100000

vulgar: SPP00001330_2.0 288 434 . gi|511782562|gb|CM001951.1|:subseq(129174847,201052) 100440 99999 - 557 M 74 222 G 0 3 M 72 216
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-06
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|511782562|gb|CM001951.1|:subseq(129174847,201052)	exonerate:protein2genome:local	gene	100000	100440	557	-	.	gene_id 2 ; sequence SPP00001330_2.0 ; gene_orientation .
gi|511782562|gb|CM001951.1|:subseq(129174847,201052)	exonerate:protein2genome:local	cds	100000	100440	.	-	.	
gi|511782562|gb|CM001951.1|:subseq(129174847,201052)	exonerate:protein2genome:local	exon	100000	100440	.	-	.	insertions 3 ; deletions 0
gi|511782562|gb|CM001951.1|:subseq(129174847,201052)	exonerate:protein2genome:local	similarity	100000	100440	557	-	.	alignment_id 2 ; Query SPP00001330_2.0 ; Align 100441 289 222 ; Align 100216 363 216
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00001330_2.0 # Protein # Selenophosphate synthetase (SPS) # Macaque (Macaca mulatta) 
        Target: gi|511782562|gb|CM001951.1|:subseq(129174847,201052) Chlorocebus sabaeus isolate 1994-021 chromosome X, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 111
   Query range: 32 -> 79
  Target range: 101052 -> 100911

     33 : ArgSerPheSerAsnTyrArgProPheGluProGlnAlaLeuGlyLeuSerProSerT :     52
          |||!!!.!.|||!     ..! !!|||.!.|||:!!::!! !! !|||..!  !|||!
          ArgThrMetSerMetArgGluSerPheAsnProLysSerTyrGluLeuAspLysSerP
 101052 : AGAACCATGTCTATGCGGGAGTCGTTTAACCCGAAAAGTTACGAATTGGACAAAAGCT : 100995

     53 : rpArgLeuThrGlyPheSerGlyMetLysGlyUnkGlyCysLysValProGlnGluTh :     71
          ::||||||||| !!|||!!!! !:!!||||||...||||||||||||||||||!!:..
          heArgLeuThrArgPheThrGluLeuLysGlyThrGlyCysLysValProGlnAspVa
 100994 : TCCGGCTAACCAGATTCACTGAACTGAAGGGCACAGGCTGCAAAGTGCCCCAAGATGT : 100938

     72 : rLeuLeuLysLeuLeuAlaGlyLeu :     79
          !|||! !|||||||||! !..!|||
          lLeuGlnLysLeuLeuGluSerLeu
 100937 : CCTGCAAAAATTGCTGGAATCTTTA : 100912

vulgar: SPP00001330_2.0 32 79 . gi|511782562|gb|CM001951.1|:subseq(129174847,201052) 101052 100911 - 111 M 47 141
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-06
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|511782562|gb|CM001951.1|:subseq(129174847,201052)	exonerate:protein2genome:local	gene	100912	101052	111	-	.	gene_id 3 ; sequence SPP00001330_2.0 ; gene_orientation .
gi|511782562|gb|CM001951.1|:subseq(129174847,201052)	exonerate:protein2genome:local	cds	100912	101052	.	-	.	
gi|511782562|gb|CM001951.1|:subseq(129174847,201052)	exonerate:protein2genome:local	exon	100912	101052	.	-	.	insertions 0 ; deletions 0
gi|511782562|gb|CM001951.1|:subseq(129174847,201052)	exonerate:protein2genome:local	similarity	100912	101052	111	-	.	alignment_id 3 ; Query SPP00001330_2.0 ; Align 101053 33 141
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis