Output_id:  SPS.3.pseudo
----------  ------------
-Species        Chlorocebus sabaeus                          -Taxid 60711
-Target         /home/U73970/luke/Selenoprofiles/selenoprofiles_3_installation/genome_linked/genome.fa
-Chromosome (+) gi|511782562|gb|CM001951.1|
-Program        genewise
-Query name     gi|73949038|ref|XP_857465.1| PREDICTED: similar to selenophosphate synthetase isoform 5 [Canis familiaris]
-Query range    1-377      length:397   coverage: 0.95
-Profile range  378-1212   length:1325  coverage: 0.63    sec_position: [551]
-ASI:           0.2699     (ignoring gaps: 0.3172)
-AWSIc:         0.5102     Z-score: -2.097
-AWSIw:         0.53     Z-score: -2.013
-State          kept

------- alignment -------
Query   MSTRESFNPESY ! FRAME ! ELDKSFRLTRFTELKGUGCKVPQDVLQKLLESLQENHFQEDEQFLGA ! FRAME ! VMPRLGIGMDTCVIPLRHG
        ||| /||||||  ! SHIFT !  /||||/||||||||| | ||||/||||||||| ||||||||||| | ! SHIFT !  | /| ||/||||| ||| 
Target  MSTWDSFNPESC    2nt    -IDKSFQLTRFTELKGTGYKVPQNVLQKLLESL*ENHFQEDEQFLVA    4nt    -MSKLAIGIDTCVILLRHD
        atatgttacgat           -agaatccaatagcagagtagccagccatcgtttgactcgggctcgg           -atacgagagatgactacg
        tccgactacagg     ta    -taagtatcgtcatagcgaatcaattaattactaaaataaaaatttc    gtta   -tcatctgtacgttttgaa
        gtagtcttaatc           -tcgctgacactaggcaccagcatcgaaggataggcccaatggtgac           -gagtctattttcttggct
                                               *                X                                           

Query   GLSLVQTTDYIY ! FRAME ! PIVDDPYMMGRIACANVLSDLYAMGVTECDNMLMLLGISNKMTDRERDKVMPLIIQGFKDAAEEAGTSVTGGQTVLN
        ||||||| |||| ! SHIFT !  |/||||||||/|||||||||| ||||||||/|||||/||||||||| |/|     ||||||||||||/ |||||||
Target  GLSLVQTMDYIY    2nt    -IIDDPYMMGRMACANVLSDLYTMGVTECDNVLMLLGVSNKMTDRERGKLM-----GFKDAAEEAGTSIRGGQTVLN
        gcttgcaagtat           -aaggctaagaagtgagcagctaaggagtgagcaccggaaaaagagagaca-----gtagggggggataaggcagta
        gtcttactaata     cg    -ttaacattggtcgcattgatactgtcagaatttttgtgaatcagaggatt-----gtaaccaacgcctgggactta
        gtcgtacgtctc           -cacctcggcggatctcctcacaggcaatctgggctacttagttgagtagg-----ttatatgaaagtagtcaaaac
                                                                                                            

Query   PWIVLGGVATTVCQPNEFIMPDNAVP ! FRAME ! GDVLVLTKPLGTQVAVAVHQWLDIKRGGLKIEKLHGSASNEAPKTLLAYQEAMMNMARLNRTA
        |||||||||  ||||/|||||||||| ! SHIFT !  || |||||| | ||| |||||/|     ||/ /      |     | ||| |||/ |||/| 
Target  PWIVLGGVAANVCQPSEFIMPDNAVP    2nt    -DVPVLTKPLRTHVAVVVHQWLNITGKQNKIKLVVTQEHVE-----LVYQEVMMNIRRLNKTT
        ctagcgggggagtccagtaacgaggc           -ggcgtaaccaacgggggcctcaaagacaaaatggacgcgg-----tgtcggaaaaaacaaaa
        cgtttggtccatgacgatttcaactc     gg    -atcttcactgcatctttaagtatcgaaaatatttcaaata-----ttaaatttatggtaacc
        cgttgaattctccgctatcgactaga           -tgaggaacggatgagtacgggtttaagtataagccaataa-----gccgggggcaggccgat
                                                                                                            

Query   AGLMHTFNAHAATDITGFGILGHAQNLAKQQRNEVSFVIHNLPVLAKMAAVSKACGNMFGLMHGTCPETSGGLLICLPREQAARFCAEIKSPKYGEGHQA
        ||||||||/| ||/| |||| |  |/||| |||/|||||||/||| |||||/||| ||| ||/ || ||| |||||||  || || ||/|||  ||||||
Target  AGLMHTFNSHVATNIMGFGIWGLEQSLAK*QRNKVSFVIHNVPVLVKMAAVNKACRNMFCLMYRTCQETSRGLLICLPHAQAGRFHAEMKSPNCGEGHQA
        ggcacatatcggaaaagtgatgcgcacgatcaaagttgacagcgcgaagggaagtaaattcataatcgatagccattccgcggctcggaatcatgggccg
        cgttactacatccattgtgtggtaagtcaaagaatctttaatctttatcctaacggattgttagcgaaccggtttgtcacacggtacataccaggagaac
        aacgcgctccgccccgctgtgtgggcgtggggcgggtgtctcaggcggtggcaccacgcccgcgccggaaactgctaatgaatactagggcccttaccaa
                                     X                                                                      

Query   W ! FRAME ! IIGIVEKGNRTARIIDKPRI-
          ! SHIFT !  /|| ||||  ||||||| | 
Target  *    4nt    -MGIEEKGNHKARIIDKPWIK
        t           -agaggagacagaaagactaa
        g    aatt   -tgtaaagaaacgttaacgta
        a           -ggtaggcccacacacacgcg
        X                                
------- positions -------
Exon 1    52343895     52343930
Exon 2    52343933     52344070
Exon 3    52344075     52344164
Exon 4    52344167     52344457
Exon 5    52344460     52344933
Exon 6    52344938     52344997

-------- features -------
None
--------- 3' seq --------
Total sequence length available downstream >= 6000
Sequence until first stop codon: 
TGA
 *