Output_id:  SPS.13.threonine
----------  ----------------
-Species        Chlorocebus sabaeus                          -Taxid 60711
-Target         /home/U73970/luke/Selenoprofiles/selenoprofiles_3_installation/genome_linked/genome.fa
-Chromosome (-) gi|511782584|gb|CM001949.1|
-Program        genewise
-Query name     gi|73949038|ref|XP_857465.1| PREDICTED: similar to selenophosphate synthetase isoform 5 [Canis familiaris]
-Query range    1-397      length:397   coverage: 1.0
-Profile range  378-1232   length:1325  coverage: 0.65    sec_position: [551]
-ASI:           0.328     (ignoring gaps: 0.3844)
-AWSIc:         0.6418     Z-score: 0.196
-AWSIw:         0.6569     Z-score: 0.374
-State          kept

------- alignment -------
Query   MSTRESFNPESYELDKSFRLTRFTELKGUGCKVPQDVLQKLLESLQENHFQEDEQFLGAVMPRLG <---Intron---> IGMDTCVIPLRHGGLSLVQ
        |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| <   6099nt   > |||||||||||||||||||
Target  MSTRESFNPESYELDKSFRLTRFTELKGTGCKVPQDVLQKLLESLQENHFQEDEQFLGAVMPRLG                IGMDTCVIPLRHGGLSLVQ
        atacgttacgatgtgaatccaatagcagagtagccggccatcgttcgactcgggctcgggacacg                agagatgactacggcttgc
        tccgactacagaataagtgtcgtcatagcggatcaattaattactaaaataaaaattgcttcgt    gt     ag   gtgtacgttctgaggtctta
        gtgggctcgatcagcaccgacactaggcaccagcatcgaaggataagcccaatggcgactgagt                ctagtttcttggctgtcgta
                                    *                                                                       

Query   TTDYIYPIVDDPYMM <---Intron---> GRIACANVLSDLYAMGVTECDNMLMLLGISNKMTDR <---Intron---> ERDKVMPLIIQGFKDAA
        ||||||||||||||| <   2356nt   > ||||||||||||||||||||||||||||/||||||| <   1948nt   > |||||||||||||||||
Target  TTDYIYPIVDDPYMM                GRIACANVLSDLYAMGVTECDNMLMLLGVSNKMTDR                ERDKVMPLIIQGFKDAA
        aagtatcagggctaa                gaagtgagcagctgaggagtgaacaccggaaaaaga                gagagaccaacgtaggg
        ccaatacttaacatt   gt     ag    ggtcgcattgatactgtcagaatttttgtgaatcag   gt     ag    agaattctttagtaacc
        catctcgcacctcgg                cgaatctcctcccaggcgatctgggctacttagtcg                agtaggtgtcattacat
                                                                                                            

Query   EEAGTSVTGGQTVLNPWIVLGGVATTVCQPN--EFIM- <---Intron---> PDNAVPGDVLVLTKPLGTQVAVAVHQWLDI <---Intron---> 
        |||||||||||||||||||||||||||||    / /   <   4845nt   > |||||||||||||||||||||||||||||| <   1442nt   > 
Target  EEAGTSVTGGQTVLNPWIVLGGVATTVCQxxxxDLLTS                PDNAVPGDVLVLTKPLGTQVAVAVHQWLDI                
        ggggatgaggcagcactagcggggaagtccnnngccat                cgaggcgggcgtaaccgacgggggcctcga                
        aacgcctcggacttacgtttggtccctgacnnnattcc   gt     ag    caactcgattttcactgcatctctaagtat   gt     ag    
        gaaagtagccaaaaccgtcgaattctctgnnnntcgc                ggctaaagtggggaacggaggagtgcgggtt                
                                                                                                            

Query   KRGGLKIEKLHGSASNEAPKTLLAYQEAMMNMARLNRTAAGLMHTFNAHAATDITGFGILGHAQNLAKQQRNEVSFVIHNLPVLAKMAAVSKACGNMFGL
             ||/ /      |     |||||||||||||||||||||||||||||| |||  |||||/|||||||||||||||||||||||||| |||||||||
Target  PEKWNKIKLVVTQEDVE-----LAYQEAMMNMARLNRTAAGLMHTFNAHAATAITG--ILGHAENLAKQQRNEVSFVIHNLPVLAKMAAVHKACGNMFGL
        cgataaaacggacgggg-----cgtcggaaaagacaaagggcacatagcggagaag--atgcggacgaccaaggttgacaccgcgaagggcagtgaatgc
        caagaatatttcaaata-----tcaaacttatcgtagcccgttactacacccctcg--ttgacaatcaaagaatctttaatcttcatcctaacggattgt
        tgagtgcaagccaacag-----gccggaggcgggccgataacgcgctccgcaccag--tgccagcgcggggcggatatcccgggcggtggtgccacgccc
                                                                                                            

Query   MHGTCPETSGGLLI- <---Intron---> ----CLPREQAARFCAEIKSPKYGEGHQAWIIGIVEKGNRTARIIDKPRIIEVAPQVATQNVNPTPGAT
        ||||||||||||||  <   7982nt   >     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  MHGTCPETSGGLLIC                GLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIVEKGNRTARIIDKPRIIEVAPQVATQNVNPTPGAT
        acgatcgatggccat                gccattccgcggcttggaatcatgggccgtaagaggagacagaaagaccaagggccggacagacacgga
        tagcgcaccggttt    gt     ag   ggtttgtcgaaccgtgcataccaagagaacgttgttaagagccgttaacgttatccatccaatacccgcc
        gcgccggcacctgc                cctgctaatgaatgctagagccattaccaagttgtaggcccacacacacgccgcaaagctatgtcatgcc
                                                                                                            

Query   S
        |
Target  S
        t
        c
        t
         
------- positions -------
Exon 1    13375344     13375536
Exon 2    13369141     13369244
Exon 3    13366677     13366784
Exon 4    13364565     13364728
Exon 5    13359629     13359719
Exon 6    13357865     13358186
Exon 7    13349671     13349882

-------- features -------
None
--------- 3' seq --------
Total sequence length available downstream >= 6000
Sequence until first stop codon: 
TAA
 *