Command line: [exonerate -m p2g --showtargetgff -q SPS_1.fa.U_to_X -t gi|511782589|gb|CM001944.1|.fastasubseq]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00001330_2.0 # Protein # Selenophosphate synthetase (SPS) # Macaque (Macaca mulatta) 
        Target: gi|511782589|gb|CM001944.1|:subseq(14548283,201189) Chlorocebus sabaeus isolate 1994-021 chromosome 4, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 720
   Query range: 97 -> 278
  Target range: 100167 -> 100710

     98 : GluAlaSerGlnGluAlaGlyMetProThrGlyAlaGlySerSerProThrPheProA :    117
          ||||||:!!|||||||||  !:!!|||  !||||||! ! !!..!|||.!!.!!|||!
          GluAlaAlaGlnGluAlaProLeuProGluGlyAlaAspProAspProAlaLeuProV
 100168 : GAGGCTGCCCAGGAAGCACCCCTGCCAGAGGGGGCGGACCCTGACCCAGCCCTTCCAG : 100225

    118 : laLeuGlyIleGlyMetAspSerCysValIleProLeuArgHisGlyGlyLeuSerLe :    136
          .!|||! !||||||!!:|||||||||||||||  !|||||||||||||||||||||||
          alLeuValIleGlyIleAspSerCysValIleLeuLeuArgHisGlyGlyLeuSerLe
 100226 : TCCTGGTCATTGGGATAGACTCTTGCGTCATCTTGCTGAGGCATGGGGGCCTGTCACT : 100282

    137 : uValGlnThrThrAspPhePheTyrProLeuValGluAspProTyrMetMetGlyArg :    155
          ||||||||||! !||||||||||||||||||||||||||||||||||||!!:||| !!
          uValGlnThrMetAspPhePheTyrProLeuValGluAspProTyrMetIleGlyCys
 100283 : GGTGCAGACCATGGACTTCTTTTACCCCTTGGTGGAGGATCCCTACATGATAGGGTGC : 100339

    156 : IleAlaCysAlaAsnValLeuSerAspLeuTyrAlaMetGlyIleThrGluCysAspA :    175
          ||||||||||||||||||||||||||||||!! |||||||||||||||||||||||||
          IleAlaCysAlaAsnValLeuSerAspLeu***AlaMetGlyIleThrGluCysAspA
 100340 : ATAGCTTGTGCCAACGTGCTGAGTGACCTCTAGGCCATGGGCATTACTGAGTGTGACA : 100399

    176 : snMetLeuMetLeuLeuSerValSerGlnSerMetSerGluGluGluArgGluLysVa :    194
          ||||||||! !|||||||||:!!||||||||||||||||||||||||!.!||||||:!
          snMetLeuThrLeuLeuSerLeuSerGlnSerMetSerGluGluGluHisGluLysIl
 100400 : ACATGTTGACGTTACTCAGCCTTAGCCAGAGTATGAGTGAGGAGGAACACGAAAAGAT : 100456

    195 : lThrProLeuMetValLysGlyPheArgAspAlaAlaGluGluGlyGlyThrAlaVal :    213
          !! !|||||||||:!!||||||||||||||||||.!!|||||||||||||||||||||
          eMetProLeuMetIleLysGlyPheArgAspAlaThrGluGluGlyGlyThrAlaVal
 100457 : AATGCCACTCATGATCAAAGGCTTTCGGGACGCTACCGAGGAAGGAGGAACTGCAGTG : 100513

    214 : ThrGlyGlyGlnThrValValAsnProTrpIleIleIleGlyGlyValAlaThrValV :    233
          ||||||||||||! !||||||!:! !!|||:!!|||:!!|||||||||||||||||||
          ThrGlyGlyGlnMetValValSerSerTrpLeuIleValGlyGlyValAlaThrValV
 100514 : ACAGGTGGACAAATGGTGGTCAGCTCTTGGCTTATCGTCGGTGGAGTTGCCACTGTGG : 100573

    234 : alCysGlnProAsnGluPheIleMetProAspSerAlaValValGlyAspValLeuVa :    252
          ||! !!:!|||!:!! !||||||||||||:!!!:!|||!.!||||||! !||||||||
          alTyrArgProSerAlaPheIleMetProAsnAsnAlaAlaValGlyGlyValLeuVa
 100574 : TATATCGGCCAAGTGCATTCATAATGCCTAATAATGCTGCTGTTGGGGGTGTGTTGGT : 100630

    253 : lLeuThrLysProLeuGlyThrGlnValAlaValAsnAlaHisGlnTrpLeuAspAsn :    271
          |||||||||||||||||||||||||||||||:!!||||||||||||! !|||||||||
          lLeuThrLysProLeuGlyThrGlnValAlaIleAsnAlaHisGln***LeuAspAsn
 100631 : GTTAACCAAACCCTTAGGAACCCAAGTTGCTATCAATGCCCACCAATAGCTGGATAAT : 100687

    272 : ProGluArgTrpAsnLysVal :    278
           !!|||||||||||| ! |||
          ThrGluArgTrpAsnHisVal
 100688 : ACTGAAAGATGGAATCACGTG : 100710

vulgar: SPP00001330_2.0 97 278 . gi|511782589|gb|CM001944.1|:subseq(14548283,201189) 100167 100710 + 720 M 181 543
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-06
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|511782589|gb|CM001944.1|:subseq(14548283,201189)	exonerate:protein2genome:local	gene	100168	100710	720	+	.	gene_id 1 ; sequence SPP00001330_2.0 ; gene_orientation .
gi|511782589|gb|CM001944.1|:subseq(14548283,201189)	exonerate:protein2genome:local	cds	100168	100710	.	+	.	
gi|511782589|gb|CM001944.1|:subseq(14548283,201189)	exonerate:protein2genome:local	exon	100168	100710	.	+	.	insertions 0 ; deletions 0
gi|511782589|gb|CM001944.1|:subseq(14548283,201189)	exonerate:protein2genome:local	similarity	100168	100710	720	+	.	alignment_id 1 ; Query SPP00001330_2.0 ; Align 100168 98 543
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00001330_2.0 # Protein # Selenophosphate synthetase (SPS) # Macaque (Macaca mulatta) 
        Target: gi|511782589|gb|CM001944.1|:subseq(14548283,201189) Chlorocebus sabaeus isolate 1994-021 chromosome 4, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 711
   Query range: 280 -> 451
  Target range: 100709 -> 101222

    281 : ValValSerArgGluGluValGluLeuAlaTyrGlnGluAlaMetPheAsnMetAlaT :    300
          |||:!!  !|||||||||||||||||||||||||||||||||! !.!!!:!|||||||
          ValIleLeuArgGluGluValGluLeuAlaTyrGlnGluAlaThrLeuSerMetAlaT
 100710 : GTGATCCTCAGAGAAGAAGTAGAGCTGGCCTATCAGGAAGCCACGCTCAGTATGGCTA : 100767

    301 : hrLeuAsnArgThrAlaAlaGlyLeuMetHisThrPheAsnAlaHisAlaAlaThrAs :    319
          ||:!!||| !!|||||||||||||||||||||! !||||||||||||!.!||||||||
          hrIleAsn***ThrAlaAlaGlyLeuMetHisLysPheAsnAlaHisValAlaThrAs
 100768 : CCATTAACTGAACTGCTGCTGGATTAATGCACAAATTTAATGCCCATGTGGCCACAGA : 100824

    320 : pIleThrGlyPheGlyIleLeuGlyHisSerGlnAsnLeuAlaLysGlnGlnArgAsn :    338
          ||||||||||||||||||||||||||||||||||||||||!.!|||||||||||||||
          pIleThrGlyPheGlyIleLeuGlyHisSerGlnAsnLeuValLysGlnGlnArgAsn
 100825 : TATCACAGGCTTTGGCATTCTAGGACACTCTCAGAACCTCGTGAAGCAACAAAGAAAT : 100881

    339 : GluValSerPheValIleHisAsnLeuProValIleAlaLysMetAlaAlaValSerL :    358
          !!:|||||||||||||||  !||||||||||||||||||||||||||||||:!!||||
          AspValSerPheValIleCysAsnLeuProValIleAlaLysMetAlaAlaIleSerL
 100882 : GATGTGTCCTTTGTCATTTGTAATCTGCCAGTCATTGCCAAGATGGCTGCCATCAGCA : 100941

    359 : ysAlaSerGlyArgPheGlyLeuLeuGlnGlyThrSerAlaGluThrSerGlyGlyLe :    377
          |||||||||||!:!||||||||||||||||||||||||||||||||||||||||||||
          ysAlaSerGlyGlnPheGlyLeuLeuGlnGlyThrSerAlaGluThrSerGlyGlyLe
 100942 : AGGCCAGTGGGCAGTTTGGGCTTCTTCAAGGAACCTCAGCTGAAACCTCAGGAGGATT : 100998

    378 : uLeuIleCysLeuProArgGluGlnAlaAlaArgPheCysSerGluIleLysSerSer :    396
          |||||||||||||||||||||||||!.!|||!.!|||||||||||||||!:!||||||
          uLeuIleCysLeuProArgGluGlnValAlaHisPheCysSerGluIleArgSerSer
 100999 : ACTGATTTGTCTTCCTAGAGAACAGGTGGCTCACTTTTGTTCTGAAATCAGATCTTCC : 101055

    397 : LysTyrGlyGluGlyHisGlnAlaTrpIleValGlyIleValGluLysGlyAsnArgT :    416
          |||||| !!||||||!.!|||||||||||||||! !||||||||||||||||||!:!|
          LysTyrArgGluGlyArgGlnAlaTrpIleValAspIleValGluLysGlyAsnGlnT
 101056 : AAGTACAGAGAGGGTCGCCAAGCATGGATTGTTGACATTGTGGAAAAGGGAAACCAGA : 101115

    417 : hrAlaArgIleIleAspLysProArgValIleGluValLeuProArgGlyAlaThrAl :    435
          ||||| !!||||||!!:|||||| !!||||||||||||||||||||||||||||||||
          hrAlaTrpIleIleGluLysPro***ValIleGluValLeuProArgGlyAlaThrAl
 101116 : CAGCCTGGATCATTGAAAAGCCTTGAGTTATTGAGGTCCTACCTCGCGGGGCCACTGC : 101172

    436 : aAlaAlaLeuAlaProAspSerSerAsnAlaSerSerGluProSerSer :    451
          ||||!.!|||||||||!    !|||||||||||||||||||||||||||
          aAlaValLeuAlaProAlaHisSerAsnAlaSerSerGluProSerSer
 101173 : TGCTGTTCTTGCTCCTGCACATTCCAATGCATCCTCAGAGCCTAGCTCA : 101222

vulgar: SPP00001330_2.0 280 451 . gi|511782589|gb|CM001944.1|:subseq(14548283,201189) 100709 101222 + 711 M 171 513
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-06
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|511782589|gb|CM001944.1|:subseq(14548283,201189)	exonerate:protein2genome:local	gene	100710	101222	711	+	.	gene_id 2 ; sequence SPP00001330_2.0 ; gene_orientation .
gi|511782589|gb|CM001944.1|:subseq(14548283,201189)	exonerate:protein2genome:local	cds	100710	101222	.	+	.	
gi|511782589|gb|CM001944.1|:subseq(14548283,201189)	exonerate:protein2genome:local	exon	100710	101222	.	+	.	insertions 0 ; deletions 0
gi|511782589|gb|CM001944.1|:subseq(14548283,201189)	exonerate:protein2genome:local	similarity	100710	101222	711	+	.	alignment_id 2 ; Query SPP00001330_2.0 ; Align 100710 281 513
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00001330_2.0 # Protein # Selenophosphate synthetase (SPS) # Macaque (Macaca mulatta) 
        Target: gi|511782589|gb|CM001944.1|:subseq(14548283,201189) Chlorocebus sabaeus isolate 1994-021 chromosome 4, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 159
   Query range: 14 -> 82
  Target range: 99949 -> 100152

     15 : AlaAlaValAlaAlaAlaGluGlySerSerGlyProAlaGlyLeuThrValGlyArgS :     34
          !.!|||:!!||||||||||||! !|||||||||||||||!.!|||:!!:!!||| !!:
          ValAlaMetAlaAlaAlaGluValSerSerGlyProAlaAlaLeuSerLeuGlyTrpA
  99950 : GTGGCCATGGCGGCGGCGGAAGTCTCCTCGGGTCCAGCGGCTTTGTCTCTGGGCTGGG : 100007

     35 : erPheSerAsnTyrArgProPheGluProGlnAlaLeuGlyLeuSerProSerTrpAr :     53
          !!||||||!:!! ! !!||||||:!!||||||  !! !|||||||||! !.!!|||||
          laPheSerSerSerTrpProPheGlnProGlnLeuTrpGlyLeuSerLeuGlyTrpAr
 100008 : CCTTCTCGAGTTCCTGGCCCTTTCAGCCTCAGTTGTGGGGTCTCAGCCTGGGCTGGCG : 100064

     54 : gLeuThrGlyPheSerGlyMet--LysGlyUnkGlyCysLysValProGlnGluThrL :     72
          ||||! !|||||||||   :!:##||||||   |||||||||||| !!||||||.!!:
          gLeuMetGlyPheSer---Val##LysGly***GlyCysLysValSerGlnGluAlaV
 100065 : ACTGATGGGCTTCTCC---GTCGGAAAGGCTGAGGCTGCAAGGTCTCGCAGGAGGCAG : 100120

     73 : euLeuLysLeuLeuAlaGlyLeuThrArgPro :     82
          !!! !|||||||||||| !!||||||||||||
          alProLysLeuLeuAlaArgLeuThrArgPro
 100121 : TGCCCAAACTCCTGGCCAGACTGACACGGCCC : 100152

vulgar: SPP00001330_2.0 14 82 . gi|511782589|gb|CM001944.1|:subseq(14548283,201189) 99949 100152 + 159 M 44 132 G 1 0 M 1 3 F 0 2 M 22 66
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-06
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|511782589|gb|CM001944.1|:subseq(14548283,201189)	exonerate:protein2genome:local	gene	99950	100152	159	+	.	gene_id 3 ; sequence SPP00001330_2.0 ; gene_orientation .
gi|511782589|gb|CM001944.1|:subseq(14548283,201189)	exonerate:protein2genome:local	cds	99950	100152	.	+	.	
gi|511782589|gb|CM001944.1|:subseq(14548283,201189)	exonerate:protein2genome:local	exon	99950	100152	.	+	.	insertions 0 ; deletions 1 ; frameshifts 2
gi|511782589|gb|CM001944.1|:subseq(14548283,201189)	exonerate:protein2genome:local	similarity	99950	100152	159	+	.	alignment_id 3 ; Query SPP00001330_2.0 ; Align 99950 15 132 ; Align 100082 60 3 ; Align 100087 61 66
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis