Output_id:  SPS.8.pseudo
----------  ------------
-Species        Chlorocebus sabaeus                          -Taxid 60711
-Target         /home/U73970/luke/Selenoprofiles/selenoprofiles_3_installation/genome_linked/genome.fa
-Chromosome (+) gi|511782589|gb|CM001944.1|
-Program        genewise
-Query name     gi|168480154|ref|NP_001108204.1| selenophosphate synthetase 2 [Bos taurus]
-Query range    10-313     length:451   coverage: 0.67
-Profile range  352-967    length:1325  coverage: 0.46    sec_position: [551]
-ASI:           0.2877     (ignoring gaps: 0.3448)
-AWSIc:         0.4028     Z-score: -3.968
-AWSIw:         0.5875     Z-score: -0.932
-State          kept

------- alignment -------
Query   GGEAMAAVAAGEGSSGPVGLPQGRGFSSYRPFEPQALGLSPSWRLTGFS ! FRAME ! GMKGUGCKVPQETLLKLLAGLTRPEVLPAPGRGLVGGLEE
        |     |/|| | ||||  |  |  |||  ||/||  |||  ||| ||| ! SHIFT !   ||||||| || / |||| ||||    |          |
Target  GSPVTVAMAAAEVSSGPAALSLGWAFSSSWPFQPQLWGLSLGWRLMGFS    2nt    -RKGUGCKVSQEAVPKLLARLTRPTPSWA----------E
        gacgaggagggggttgcggttcgtgttattctcccttgcacgtccagtt           -cagtgtagtcgggcaccgacaccacatg----------g
        ggctctctcccatccgccctctggctcgcgctacatggtgtgggttgtc     gt    -gaggggatcaactcattcgtcgcccggc----------a
        accgggcggggaccgtagtgtgcgccgtcgctgtgggtccgcgaggccc           -gacaccgcgggagcacgcagagcaccgt----------g
                                                                        *                                   

Query   TAQEAGLPVRAEPSPPFPTLGIGMDSCVIPLRHGGLSLVQTTDFFYPLVEDPYMMGRIACANVLSDLYAMGITECDNMLMLLSVSQSMPEEEREKITPLM
         |||| ||  |/| |  | | ||/||||| ||||||||||| ||||||||||||/| |||||||||| ||||||||||| |||/|||| ||| ||| |||
Target  AAQEAPLPEGADPDPALPVLVIGIDSCVILLRHGGLSLVQTMDFFYPLVEDPYMIGCIACANVLSDL*AMGITECDNMLTLLSLSQSMSEEEHEKIMPLM
        ggcggcccggggcgcgccgcgagagttgatcacggctcgcaagtttctgggctaagtagtgagcagctgagaagtgaatatcacacaaagggcgaaacca
        ccaacctcagcacacctcttttgtacgttttgaggtcttactattacttaacattggtcgcattgatactgtcagaattcttgtgagtgaaaaaattctt
        tcgaacgagggctcactacgctgactcccgggtgcgagggcgcctccgggtccgagcattccggtccgcgcttgtccgggacctcgtgtggacagagacg
                                                                           X                                

Query   IKGFRDAAEEGGTAVTGGQTVVNPWIIIGGVATVVCQPNEFILPDSAVVGDVLVLTKPLGTQVAVNAHQWLDNPERWNKI ! FRAME ! KMVVSREEV
        ||||||| ||||||||||| ||/ |/|/||||||| /|/ ||/|//| || |||||||||||||/|||| ||| |||| / ! SHIFT !  //  ||||
Target  IKGFRDATEEGGTAVTGGQMVVSSWLIVGGVATVVYRPSAFIMPNNAAVGGVLVLTKPLGTQVAINAHQ*LDNTERWNHV    2nt    -IL--REEV
        aagtcggaggggaggaggcaggattcagggggaggtccagtaacaaggggggtgtaactgacggaagcctcgaagatacg           -ac--aggg
        tagtgaccaaggcctcggatttgcgtttggtccttagcgctttcaacctggttttcactgcatctacaaataacaggaat     tg    -tt--gaat
        cactgctcgaaatagataaggcctgtcctatctgatgatacagttttttgtgggacacaacattctccaggtttaagtcg           -cc--aaaa
                                                                             X                              

Query   ELGYQEAMFNMATLNRIAAGLMHTFN
        || ||||  /|||/|  |||||| ||
Target  ELAYQEATLSMATIN*TAAGLMHKFN
        gcgtcggacaagaaatagggtacata
        atcaaacctgtcctagcccgttaata
        ggctgacgctgtctcatttaagcatt
                       X          
------- positions -------
Exon 1    14648218     14648364
Exon 2    14648367     14648993
Exon 3    14648996     14649091

-------- features -------
None
--------- 3' seq --------
Total sequence length available downstream >= 6000
Sequence until first stop codon: 
GCCCATGTGGCCACAGATATCACAGGCTTTGGCATTCTAGGACACTCTCAGAACCTCGTGAAGCAACAAAGAAATGATGTGTCCTTTGTCATTTGTAATCTGCCAGTCATTGCCAAGATGGCTGCCATCAGCAAGGCCAGTGGGCAGTTTGGGCTTCTTCAAGGAACCTCAGCTGAAACCTCAGGAGGATTACTGATTTGTCTTCCTAGAGAACAGGTGGCTCACTTTTGTTCTGAAATCAGATCTTCCAAGTACAGAGAGGGTCGCCAAGCATGGATTGTTGACATTGTGGAAAAGGGAAACCAGACAGCCTGGATCATTGAAAAGCCTTGA
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