Output_id:  pstk.6.homologue
----------  ----------------
-Species        Chlorocebus sabaeus                          -Taxid 60711
-Target         /home/U73970/luke/Selenoprofiles/selenoprofiles_3_installation/genome_linked/genome.fa
-Chromosome (+) gi|511782584|gb|CM001949.1|
-Program        genewise
-Query name     gi|154757512|gb|AAI51822.1| PSTK protein [Bos taurus]
-Query range    1-340      length:351   coverage: 0.97
-Profile range  1-466      length:478   coverage: 0.97
-ASI:           0.2808     (ignoring gaps: 0.3765)
-AWSIc:         0.5881     Z-score: 1.106
-AWSIw:         0.6313     Z-score: 1.443
-State          kept

------- alignment -------
Query   MKMGEDVRGAHSERPQKLVLCVLCGLPAAGKSTFARALRHWLQQELGWAVGVVAYDDVMPEAVL--EK---- <---Intron---> PSQWKLFRQELL
        ||  |  ||  |/ |/| |||||||||||||||||||| | |/|| ||||||||||||||/| |  |/     <   2073nt   > |||||| |||||
Target  MKTAETTRGTGSDGPRKRVLCVLCGLPAAGKSTFARALAHRLRQEQGWAVGVVAYDDVMPDAFLAGERARPA                PSQWKLLRQELL
        aaaggaaagagaggccacgctgctgccgggatatgcgcgcccccgcgtggggggtgggacggtcgggagccg                ctctatcccgct
        taccaccggcggagcgagttgttggtcccgacctcgctcagtgaaaggctgttcaaattcacttcgagcgcc   gt     ag    ccagattgaatt
        ggccgccaaaccccgaaacccccccccgaaagtcgccccccgggggtgctttcgtttcgccgtccgaagagg                acggagtagagg
                                                                                                            

Query   KFLEHFLLAVINGCQMSAPPSKTEAMWKDFITCLKDQDLISSAAVEAQALYPLTKTAVSRPLLLILDDNFYYQN <---Intron---> SSGFCQLFLD
        |/||/||/||||||||| |||/|||||/|||||||||||| ||| |||/ | |||||||||| |/||||||||| <   280nt    > | ||||||||
Target  KYLEYFLMAVINGCQMSVPPSRTEAMWEDFITCLKDQDLIFSAAYEAQSCYLLTKTAVSRPLFLVLDDNFYYQN                SLGFCQLFLD
        atcgtttaggaagtcatgccaaaggatggtaatcagcgcattggtggctttctaaaggtacttcgtggatttca                ttgttccttg
        aataatttcttaggatctccggcactgaattcgtaaaatttcccaacacgattcacctcgctttttaaataaa    gt     ag   actgtgattta
        gcgaccggccttgtggtcaccgtacggattaccagtatgattaatgcgtcccaaattttatgtgtgtcttttg                tagctcgctat
                                                                                                            

Query   CALETCLQRNAQRPRPLPAETIHQMGNKIEKPNPEKNAWEHHSLAVQSPACASEAR <---Intron---> LKLTDLLITALENPIKHVEENLEQK <-
        | ||||||||/|||/ || |||| || |/||||||||||||/|| / |||| |||  <   2593nt   > |//||||/||||||/|/ |/|/||| < 
Target  CPLETCLQRNSQRPQALPPETIHLMGRKLEKPNPEKNAWEHNSLTIPSPACGSEAS                LEVTDLLLTALENPVKYAEDNMEQK   
        tccgattcaaacaccgcccgaaccagaacgacacgaagtgcaacaacacgtgtgga                cggagttcagtgacgatgggaagca   
        gctacgtagagagcactccactattggataacacaaacgaaagtctcgccggcacg   gt     ag    tatcatttcctaactaacaaataaa   
        tttgctaggtcggagagttgcccggaagaagcctgattgaccccatgtaattggc                cgggttagcttgatgaattgctgaag   
                                                                                                            

Query   --Intron---> ETDRLIGSTNILHQADQTLRRIVSQTMKEAKD <---Intron---> EQMFPYNLKLLAEELNKLKAEFLEDLRQGNKKYLCFQQT
          487nt    > ||||/| ||||||/|||||||||||||| ||| <   3214nt   > ||/ |/||||||||||||||||||||/||||||||||||
Target               ETDRIICSTNILHKADQTLRRIVSQTMKGAKD                EQVLPHNLKLLAEELNKLKAEFLEDLKQGNKKYLCFQQT
                     gagaaattaaaccaggcaccaagtcaaaggag                gcgcccataccgggcaacaggttggcacgaaatcttcca
        gt     ag    acagttgccattaacaactggttcactagca    gt     ag   aaattcaatattcaataatacattaataagaaaatgtaac
                     gatatttatctttattgacagtatgaggaaa                taagttccggtaaaatcgcaagtgacaaaacaacgctgac
                                                                                                            

Query   IDLADVISFFHYEKDNIVRKYFSKQH
        ||//||||||||||||||||||||||
Target  IDISDVISFFHYEKDNIVRKYFSKQH
        agatggatttctgagaagcatttacc
        tatcattcttaaaaaattgaatcaaa
        tcaatcttttttgatttaggttaggt
                                  
------- positions -------
Exon 1    115655213    115655428
Exon 2    115657502    115657757
Exon 3    115658038    115658236
Exon 4    115660830    115660905
Exon 5    115661393    115661486
Exon 6    115664701    115664897

-------- features -------
None
--------- 3' seq --------
Total sequence length available downstream >= 6000
Sequence until first stop codon: 
TAA
 *