genewise output
Score 670.85 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000052_2.0    1 MKTAENIRGTGSDGPRKRGLCVLCGLPAAGKSTFARALAHRLQQEQGWA 
                     MKTAE  RGTGSDGPRKR LCVLCGLPAAGKSTFARALAHRL+QEQGWA 
                     MKTAETTRGTGSDGPRKRVLCVLCGLPAAGKSTFARALAHRLRQEQGWA 
gi|511782584|gb50000 aaaggaaagagaggccacgctgctgccgggatatgcgcgcccccgcgtg 
                     taccaccggcggagcgagttgttggtcccgacctcgctcagtgaaaggc 
                     ggccgccaaaccccgaaacccccccccgaaagtcgccccccgggggtgc 


SPP00000052_2.0   50 IGVVAYDDVMPDAFLAGARARPA                       PSQ 
                     +GVVAYDDVMPDAFLAG RARPA                       PSQ 
                     VGVVAYDDVMPDAFLAGERARPA                       PSQ 
gi|511782584|gb50147 gggggtgggacggtcgggagccgGTCAGCA  Intron 1   TAGctc 
                     tgttcaaattcacttcgagcgcc<0-----[50216:52288]-0>cca 
                     tttcgtttcgccgtccgaagagg                       acg 


SPP00000052_2.0   76 WKLLRQELLKYLEYFLMAVINGCQMSVPPNRTEAMWEDFITCLKDQDLI 
                     WKLLRQELLKYLEYFLMAVINGCQMSVPP+RTEAMWEDFITCLKDQDLI 
                     WKLLRQELLKYLEYFLMAVINGCQMSVPPSRTEAMWEDFITCLKDQDLI 
gi|511782584|gb52298 tatcccgctatcgtttaggaagtcatgccaaaggatggtaatcagcgca 
                     gattgaattaataatttcttaggatctccggcactgaattcgtaaaatt 
                     gagtagagggcgaccggccttgtggtcaccgtacggattaccagtatga 


SPP00000052_2.0  125 FSAAFEAQSCYLLTKTAVSRPLFLVLDDNFYYQSMRYEVYQLARK     
                     FSAA+EAQSCYLLTKTAVSRPLFLVLDDNFYYQSMRYEV QLARK     
                     FSAAYEAQSCYLLTKTAVSRPLFLVLDDNFYYQSMRYEVNQLARK     
gi|511782584|gb52445 ttggtggctttctaaaggtacttcgtggatttcaaatggaccgca     
                     tcccaacacgattcacctcgctttttaaataaagtgaataatcga     
                     ttaatgcgtcccaaattttatgtgtgtcttttgtgataccggtga     


SPP00000052_2.0  170                           SLGFCQLFLDCPLETCLQRNGQR 
                                               SLGFCQLFLDCPLETCLQRN QR 
                               Y:Y[tat]        SLGFCQLFLDCPLETCLQRNSQR 
gi|511782584|gb52580 TGTAATTA  Intron 2   CAGATttgttccttgtccgattcaaaca 
                      <1-----[52581:52824]-1>  ctgtgatttagctacgtagagag 
                                               agctcgctattttgctaggtcgg 


SPP00000052_2.0  194 PQALPPETIHLMGRKLEKPNPEKNAWEHNSLTIPSPACASEA        
                     PQALPPETIHLMGRKLEKPNPEKNAWEHNSLTIPSPAC SEA        
                     PQALPPETIHLMGRKLEKPNPEKNAWEHNSLTIPSPACGSEA        
gi|511782584|gb52896 ccgcccgaaccagaacgacacgaagtgcaacaacacgtgtgg        
                     cactccactattggataacacaaacgaaagtctcgccggcac        
                     agagttgcccggaagaagcctgattgaccccatgtaattggc        


SPP00000052_2.0  236                           LEVTDLLLTALENPVKYAEDNME 
                                               LEVTDLLLTALENPVKYAEDNME 
                                S:S[agc]       LEVTDLLLTALENPVKYAEDNME 
gi|511782584|gb53022 AGGTATTCC  Intron 3   TAGCcggagttcagtgacgatgggaag 
                       <2-----[53024:55616]-2> tatcatttcctaactaacaaata 
                                               gggttagcttgatgaattgctga 


SPP00000052_2.0  260 QK                       DTDRIICSTNILHKTDQTLRRIVS 
                     QK                       +TDRIICSTNILHK DQTLRRIVS 
                     QK                       ETDRIICSTNILHKADQTLRRIVS 
gi|511782584|gb55687 caGTAAACT  Intron 4   TAGgagaaattaaaccaggcaccaagt 
                     aa<0-----[55693:56179]-0>acagttgccattaacaactggttc 
                     ag                       gatatttatctttattgacagtat 


SPP00000052_2.0  286 QTMKEAK                          NQEAFSEMTFKQRWVR 
                     QTMK AK                              FSEMTFKQRW R 
                     QTMKGAK          G:G[ggc]        ----FSEMTFKQRWER 
gi|511782584|gb56252 caaaggaGGTATGAT  Intron 5   AAGGC    ttgaatacatga 
                     actagca <1-----[56274:56651]-1>      tcatctaaggag 
                     gaggaaa                              caggatgaagaa 


SPP00000052_2.0  310 ANHAAIWRIILGNEHIKCRSAKVGWLQCCRIEKRPLSTG           
                     ANHA IWRIILGNEHIKCRS + GWL+CC I+KRPLS G           
                     ANHADIWRIILGNEHIKCRS!R-GWLECCGIKKRPLSMG           
gi|511782584|gb56690 gacggataaacgagcaataa2a gtcgttgaaaactaag           
                     caacatggtttgaaataggg g ggtagggtaagctgtg           
                     gctatcggctactaccgcac a tgggttacgggagcgg           


//
Making a Y in phase 1 intron
Making a S in phase 2 intron
Making a G in phase 1 intron
>gi|511782584|gb|CM001949.1|:subseq(115605213,106764).pep
MKTAETTRGTGSDGPRKRVLCVLCGLPAAGKSTFARALAHRLRQEQGWAVGVVAYDDVMP
DAFLAGERARPAPSQWKLLRQELLKYLEYFLMAVINGCQMSVPPSRTEAMWEDFITCLKD
QDLIFSAAYEAQSCYLLTKTAVSRPLFLVLDDNFYYQSMRYEVNQLARKYSLGFCQLFLD
CPLETCLQRNSQRPQALPPETIHLMGRKLEKPNPEKNAWEHNSLTIPSPACGSEASLEVT
DLLLTALENPVKYAEDNMEQKETDRIICSTNILHKADQTLRRIVSQTMKGAKGFSEMTFK
QRWERANHADIWRIILGNEHIKCRSXRGWLECCGIKKRPLSMG
//
>gi|511782584|gb|CM001949.1|:subseq(115605213,106764).[50000:56749].sp
ATGAAGACCGCCGAGACCACCAGAGGAACAGGCAGCGACGGCCCGCGAAAACGAGTCCTC
TGCGTCCTCTGCGGCCTCCCCGCGGCAGGAAAATCGACTTTCGCGCGCGCCCTCGCCCAC
CGCCTGCGGCAGGAGCAGGGTTGGGCCGTTGGTGTTGTCGCGTATGATGATGTCATGCCC
GACGCGTTTCTCGCCGGGGAAAGAGCGCGACCGGCGCCATCCCAGTGGAAATTGCTTCGA
CAGGAACTGTTGAAGTACCTGGAATACTTCTTGATGGCCGTCATTAATGGGTGTCAGATG
TCTGTCCCACCCAGCAGGACTGAAGCCATGTGGGAAGATTTTATAACCTGCCTAAAGGAT
CAAGATCTGATATTTTCTGCAGCATATGAGGCCCAGTCTTGCTACCTCTTAACAAAAACT
GCTGTTTCTAGACCTTTGTTTCTGGTTTTGGATGACAATTTTTATTATCAGAGTATGAGA
TATGAAGTCAACCAGCTGGCTCGGAAATATTCATTGGGCTTTTGCCAGCTCTTTTTAGAT
TGTCCTCTTGAGACCTGTTTACAGAGGAATAGCCAGAGGCCACAGGCACTGCCTCCTGAG
ACCATCCACCTGATGGGAAGAAAGCTAGAAAAGCCCAACCCTGAGAAAAATGCTTGGGAA
CACAACAGCCTCACAATTCCGAGTCCAGCATGTGGTTCGGAGGCCAGCCTGGAGGTGACT
GATTTATTGCTCACTGCTTTGGAAAATCCGGTAAAATATGCTGAGGACAATATGGAACAA
AAGGAGACAGATAGAATTATTTGTTCAACTAACATTCTTCATAAAGCTGATCAGACACTC
CGAAGGATTGTATCTCAGACAATGAAGGGAGCAAAAGGCTTCTCAGAGATGACATTTAAG
CAAAGATGGGAAAGAGCGAACCATGCAGATATCTGGAGGATCATTCTAGGCAATGAACAC
ATCAAGTGCAGAAGC
>gi|511782584|gb|CM001949.1|:subseq(115605213,106764).[56752:56802].sp
AGAGGTTGGCTGGAGTGTTGTGGAATCAAGAAGAGGCCATTGAGCATGGGG
//
gi|511782584|gb|CM001949.1|:subseq(115605213,106764)	GeneWise	match	50000	56749	644.94	+	.	gi|511782584|gb|CM001949.1|:subseq(115605213,106764)-genewise-prediction-1
gi|511782584|gb|CM001949.1|:subseq(115605213,106764)	GeneWise	cds	50000	50215	0.00	+	0	gi|511782584|gb|CM001949.1|:subseq(115605213,106764)-genewise-prediction-1
gi|511782584|gb|CM001949.1|:subseq(115605213,106764)	GeneWise	intron	50216	52288	0.00	+	.	gi|511782584|gb|CM001949.1|:subseq(115605213,106764)-genewise-prediction-1
gi|511782584|gb|CM001949.1|:subseq(115605213,106764)	GeneWise	cds	52289	52580	0.00	+	0	gi|511782584|gb|CM001949.1|:subseq(115605213,106764)-genewise-prediction-1
gi|511782584|gb|CM001949.1|:subseq(115605213,106764)	GeneWise	intron	52581	52824	0.00	+	.	gi|511782584|gb|CM001949.1|:subseq(115605213,106764)-genewise-prediction-1
gi|511782584|gb|CM001949.1|:subseq(115605213,106764)	GeneWise	cds	52825	53023	0.00	+	2	gi|511782584|gb|CM001949.1|:subseq(115605213,106764)-genewise-prediction-1
gi|511782584|gb|CM001949.1|:subseq(115605213,106764)	GeneWise	intron	53024	55616	0.00	+	.	gi|511782584|gb|CM001949.1|:subseq(115605213,106764)-genewise-prediction-1
gi|511782584|gb|CM001949.1|:subseq(115605213,106764)	GeneWise	cds	55617	55692	0.00	+	1	gi|511782584|gb|CM001949.1|:subseq(115605213,106764)-genewise-prediction-1
gi|511782584|gb|CM001949.1|:subseq(115605213,106764)	GeneWise	intron	55693	56179	0.00	+	.	gi|511782584|gb|CM001949.1|:subseq(115605213,106764)-genewise-prediction-1
gi|511782584|gb|CM001949.1|:subseq(115605213,106764)	GeneWise	cds	56180	56273	0.00	+	0	gi|511782584|gb|CM001949.1|:subseq(115605213,106764)-genewise-prediction-1
gi|511782584|gb|CM001949.1|:subseq(115605213,106764)	GeneWise	intron	56274	56651	0.00	+	.	gi|511782584|gb|CM001949.1|:subseq(115605213,106764)-genewise-prediction-1
gi|511782584|gb|CM001949.1|:subseq(115605213,106764)	GeneWise	cds	56652	56749	0.00	+	2	gi|511782584|gb|CM001949.1|:subseq(115605213,106764)-genewise-prediction-1
gi|511782584|gb|CM001949.1|:subseq(115605213,106764)	GeneWise	match	56752	56802	28.91	+	.	gi|511782584|gb|CM001949.1|:subseq(115605213,106764)-genewise-prediction-2
gi|511782584|gb|CM001949.1|:subseq(115605213,106764)	GeneWise	cds	56752	56802	0.00	+	0	gi|511782584|gb|CM001949.1|:subseq(115605213,106764)-genewise-prediction-2
//