Output_id:  MsrA.2.cysteine
----------  ---------------
-Species        Chlorocebus sabaeus                          -Taxid 60711
-Target         /home/U73970/luke/Selenoprofiles/selenoprofiles_3_installation/genome_linked/genome.fa
-Chromosome (-) gi|511782585|gb|CM001948.1|
-Program        genewise
-Query name     gi|27806537|ref|NP_776539.1| methionine sulfoxide reductase A [Bos taurus] gi|1205993|gb|AAC48539.1| peptide methionine sulfoxide reductase
-Query range    47-233     length:233   coverage: 0.8
-Profile range  160-398    length:398   coverage: 0.6    sec_position: [188]
-ASI:           0.6139     (ignoring gaps: 0.6291)
-AWSIc:         0.7734     Z-score: -0.775
-AWSIw:         0.8425     Z-score: 0.364
-State          kept

------- alignment -------
Query   KHHVNGNRTVEPFPEGTQMAVFG <---Intron---> MGUFWGAERKFWTLKGVYSTQVGFAGGYTPNPTYKEVCSG <---Intron---> KTGHA
        ||||||||||||||||||||||| <  35944nt   > || ||||||||| |||||||||||||||| |||||||||  <  57863nt   > |||||
Target  KHHVNGNRTVEPFPEGTQMAVFG                MGCFWGAERKFWVLKGVYSTQVGFAGGYTSNPTYKEVCSE                KTGHA
        accgagaaaggctcggacaggtg                agtttgggaattgtaggttacggtgggtatacataggttg                aagcg
        aaatagagctactcagcatctt    gt     ag   gtggtggcagatgttagtaccatgtcggaccaccaaatgc    gt     ag   aacgac
        attctccaacatcagaaggtat                agctcgatagacgcgaagtatatttaacttattttaacca                aatcta
                                                 *                                                          

Query   EVVRVVFQPEHISFEELLKVFWENHDPTQG <---Intron---> MRQGNDHGSQYRSAIYPTSAEHVGAALKSKEDYQK <---Intron---> VLS
        ||||||/||||||||||||||||||||||| <  18208nt   > ||||||||/|||||||||||/ / ||| ||||||| <  104152nt  > |||
Target  EVVRVVYQPEHISFEELLKVFWENHDPTQG                MRQGNDHGTQYRSAIYPTSAKQMEAALSSKEDYQK                VLS
        gggcggtccgcaatggccagttgacgcacg                accgagcgactctgatcatgacagggcataggtca                gct
        attgttaacaatgtaattattgaaaacca    gt     ag   gtgagaaagcaagcctaccccaatacctgcaaaaaa   gt     ag    ttc
        accaggcgaaccttgagcgccggtccgca                tgcggtctctgccgcccgtccgagggcgccagccag                tta
                                                                                                            

Query   EHGFGLITTDIREGQTFYYAEDYHQQYLSKDPDGYCGLGGTGVSCPLGIKK
        ||||| ||||||||||||||||||||||||/|/|||||||||||||/||||
Target  EHGFGPITTDIREGQTFYYAEDYHQQYLSKNPNGYCGLGGTGVSCPMGIKK
        gcgtgcaaagacggcatttgggtccctcaaacagttgcggaggttcagaaa
        aagtgctccatgagactaacaaaaaaatgaacagaggtggcgtcgctgtaa
        gcctccctcccgaagacccgacccggcgcgcccccccggcccgccagttaa
                                                           
------- positions -------
Exon 1    8881277      8881343
Exon 2    8845213      8845332
Exon 3    8787245      8787349
Exon 4    8768930      8769036
Exon 5    8664616      8664777

-------- features -------
None
--------- 3' seq --------
Total sequence length available downstream >= 6000
Sequence until first stop codon: 
TAA
 *