genewise output
Score 497.92 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000044_2.0    1 MLSATRRACQLLLLHSLFPVPRMGNSASNIVSPQEALPGRKEQTPVA   
                     MLSATRRA QLLLLHSLFPVPRMGNSAS+IVSPQEALPGRKEQTPVA   
                     MLSATRRARQLLLLHSLFPVPRMGNSASSIVSPQEALPGRKEQTPVA   
gi|511782585|-410606 actgacagcccccccactcgcaagatgtaagaccggtcgcagcacgg   
                     ttcccggcgattttagttctcgtgacccgttgcaactcggaaacctc   
                     gcgccggtcgccccccctccgggccgcgcccccggcggcggagctag   


SPP00000044_2.0   48                           KHHVNGNRTVEPFPEGTQMAVF  
                                               KHHVNGNRTVEPFPEGTQMAVF  
                               A:A[gcc]        KHHVNGNRTVEPFPEGTQMAVF  
gi|511782585|-410465 GGTAAGCA  Intron 1   TAGCCaccgagaaaggctcggacaggt  
                      <1-----[410464:26673-1>  aaatagagctactcagcatctt  
                                               attctccaacatcagaaggtat  


SPP00000044_2.0   71                           MGCFWGAERKFWVLKGVYSTQVG 
                                               MGCFWGAERKFWVLKGVYSTQVG 
                               G:G[gga]        MGCFWGAERKFWVLKGVYSTQVG 
gi|511782585|-266661 GGTAAGAT  Intron 2   AAGGAagtttgggaattgtaggttacgg 
                      <1-----[266660:23071-1>  tggtggcagatgttagtaccatg 
                                               gctcgatagacgcgaagtatatt 


SPP00000044_2.0   95 FAGGYTSNPTYKEVCS                          KTGHAEV 
                     FAGGYTSNPTYKEVCS                          KTGHAEV 
                     FAGGYTSNPTYKEVCS          E:E[gaa]        KTGHAEV 
gi|511782585|-230645 tgggtatacataggttGGTAGGAA  Intron 3   AAGAAaagcggg 
                     tcggaccaccaaatgc <1-----[230596:17273-1>  acgacat 
                     taacttattttaacca                          atctaac 


SPP00000044_2.0  119 VRVVYQPEHMSFEELLKVFWENHDPTQ                       
                     VRVVYQPEH+SFEELLKVFWENHDPTQ                       
                     VRVVYQPEHISFEELLKVFWENHDPTQ          G:G[ggt]     
gi|511782585|-172710 gcggtccgcaatggccagttgacgcacGGTAGAGT  Intron 4     
                     tgttaacaatgtaattattgaaaacca <1-----[172628:154421 
                     caggcgaaccttgagcgccggtccgca                       


SPP00000044_2.0  146      MRQGNDHGTQYRSAIYPTSAKQMEAALSSKENYQK          
                          MRQGNDHGTQYRSAIYPTSAKQMEAALSSKE+YQK          
                          MRQGNDHGTQYRSAIYPTSAKQMEAALSSKEDYQK          
gi|511782585|-154423 CAGGTaccgagcgactctgatcatgacagggcataggtca          
                     -1>  tgagaaagcaagcctaccccaatacctgcaaaaaa          
                          gcggtctctgccgcccgtccgagggcgccagccag          


SPP00000044_2.0  182                        VLSEHGFGPITTDIREGQTFYYAEDY 
                                            VLSEHGFGPITTDIREGQTFYYAEDY 
                                            VLSEHGFGPITTDIREGQTFYYAEDY 
gi|511782585|-154313 GTAGGGG  Intron 5   CAGgctgcgtgcaaagacggcatttgggt 
                     <0-----[154313:50162-0>ttcaagtgctccatgagactaacaaa 
                                            ttagcctccctcccgaagacccgacc 


SPP00000044_2.0  208 HQQYLSKNPNGYCGLGGTGVSCPVGIKK                      
                     HQQYLSKNPNGYCGLGGTGVSCP+GIKK                      
                     HQQYLSKNPNGYCGLGGTGVSCPMGIKK                      
gi|511782585|g-50083 ccctcaaacagttgcggaggttcagaaa                      
                     aaaatgaacagaggtggcgtcgctgtaa                      
                     cggcgcgcccccccggcccgccagttaa                      


//
Making a A in phase 1 intron
Making a G in phase 1 intron
Making a E in phase 1 intron
Making a G in phase 1 intron
>gi|511782585|gb|CM001948.1|:subseq(8614616,460606).pep
MLSATRRARQLLLLHSLFPVPRMGNSASSIVSPQEALPGRKEQTPVAAKHHVNGNRTVEP
FPEGTQMAVFGMGCFWGAERKFWVLKGVYSTQVGFAGGYTSNPTYKEVCSEKTGHAEVVR
VVYQPEHISFEELLKVFWENHDPTQGMRQGNDHGTQYRSAIYPTSAKQMEAALSSKEDYQ
KVLSEHGFGPITTDIREGQTFYYAEDYHQQYLSKNPNGYCGLGGTGVSCPMGIKK
//
>gi|511782585|gb|CM001948.1|:subseq(8614616,460606).[410606:49998].sp
ATGCTCTCGGCCACCCGGAGGGCTCGCCAGCTCCTCCTCCTCCACAGCCTCTTTCCCGTC
CCGAGGATGGGCAACTCGGCCTCGAGCATCGTCAGCCCCCAGGAGGCCTTGCCGGGCCGG
AAGGAACAGACCCCTGTAGCGGCCAAACATCATGTCAATGGCAACAGAACAGTCGAACCT
TTCCCAGAGGGAACACAGATGGCTGTATTTGGAATGGGCTGTTTCTGGGGAGCTGAAAGG
AAATTCTGGGTCTTGAAAGGAGTGTATTCAACTCAAGTTGGTTTTGCAGGAGGCTATACT
TCAAATCCTACTTATAAAGAAGTCTGCTCAGAAAAAACTGGCCATGCAGAAGTCGTCCGA
GTGGTGTACCAGCCAGAACACATCAGTTTTGAGGAACTGCTCAAGGTCTTCTGGGAGAAT
CACGACCCGACCCAAGGTATGCGCCAGGGGAATGACCATGGCACTCAGTACCGCTCGGCC
ATCTACCCGACTTCCGCCAAGCAAATGGAGGCGGCCCTGAGCTCCAAAGAGGACTACCAA
AAGGTTCTTTCAGAGCACGGCTTTGGCCCCATCACTACCGACATCCGGGAAGGACAGACA
TTCTACTACGCGGAAGACTACCACCAGCAGTACCTGAGCAAGAACCCCAACGGCTACTGC
GGCCTGGGGGGCACCGGCGTGTCCTGCCCAATGGGTATTAAAAAA
//
gi|511782585|gb|CM001948.1|:subseq(8614616,460606)	GeneWise	match	410606	50000	497.92	-	.	gi|511782585|gb|CM001948.1|:subseq(8614616,460606)-genewise-prediction-1
gi|511782585|gb|CM001948.1|:subseq(8614616,460606)	GeneWise	cds	410606	410465	0.00	-	0	gi|511782585|gb|CM001948.1|:subseq(8614616,460606)-genewise-prediction-1
gi|511782585|gb|CM001948.1|:subseq(8614616,460606)	GeneWise	intron	410464	266730	0.00	-	.	gi|511782585|gb|CM001948.1|:subseq(8614616,460606)-genewise-prediction-1
gi|511782585|gb|CM001948.1|:subseq(8614616,460606)	GeneWise	cds	266729	266661	0.00	-	2	gi|511782585|gb|CM001948.1|:subseq(8614616,460606)-genewise-prediction-1
gi|511782585|gb|CM001948.1|:subseq(8614616,460606)	GeneWise	intron	266660	230717	0.00	-	.	gi|511782585|gb|CM001948.1|:subseq(8614616,460606)-genewise-prediction-1
gi|511782585|gb|CM001948.1|:subseq(8614616,460606)	GeneWise	cds	230716	230597	0.00	-	2	gi|511782585|gb|CM001948.1|:subseq(8614616,460606)-genewise-prediction-1
gi|511782585|gb|CM001948.1|:subseq(8614616,460606)	GeneWise	intron	230596	172734	0.00	-	.	gi|511782585|gb|CM001948.1|:subseq(8614616,460606)-genewise-prediction-1
gi|511782585|gb|CM001948.1|:subseq(8614616,460606)	GeneWise	cds	172733	172629	0.00	-	2	gi|511782585|gb|CM001948.1|:subseq(8614616,460606)-genewise-prediction-1
gi|511782585|gb|CM001948.1|:subseq(8614616,460606)	GeneWise	intron	172628	154421	0.00	-	.	gi|511782585|gb|CM001948.1|:subseq(8614616,460606)-genewise-prediction-1
gi|511782585|gb|CM001948.1|:subseq(8614616,460606)	GeneWise	cds	154420	154314	0.00	-	2	gi|511782585|gb|CM001948.1|:subseq(8614616,460606)-genewise-prediction-1
gi|511782585|gb|CM001948.1|:subseq(8614616,460606)	GeneWise	intron	154313	50162	0.00	-	.	gi|511782585|gb|CM001948.1|:subseq(8614616,460606)-genewise-prediction-1
gi|511782585|gb|CM001948.1|:subseq(8614616,460606)	GeneWise	cds	50161	50000	0.00	-	0	gi|511782585|gb|CM001948.1|:subseq(8614616,460606)-genewise-prediction-1
//