Command line: [exonerate -m p2g --showtargetgff -q GPx8.fa.U_to_X -t gi|511782589|gb|CM001944.1|.fastasubseq]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00001325_2.0 # Protein # Glutathione peroxidase 8 (GPx8) # Macaque (Macaca mulatta) 
        Target: gi|511782589|gb|CM001944.1|:subseq(51294294,203209) Chlorocebus sabaeus isolate 1994-021 chromosome 4, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 542
   Query range: 0 -> 124
  Target range: 99999 -> 103209

      1 : ValSerLeuValValAsnValAlaSerAspCysGlnLeuThrAspArgAsnTyrLeuA :     20
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          ValSerLeuValValAsnValAlaSerAspCysGlnLeuThrAspArgAsnTyrLeuA
 100000 : GTTTCACTAGTTGTAAACGTGGCTAGTGACTGCCAACTCACAGACAGAAATTACTTAG : 100057

     21 : laLeuLysGluLeuHisLysGluPheGlyProSerHisPheSerValLeuAlaPhePr :     39
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          laLeuLysGluLeuHisLysGluPheGlyProSerHisPheSerValLeuAlaPhePr
 100058 : CACTGAAGGAACTGCACAAAGAGTTTGGACCATCCCACTTCAGCGTGTTGGCTTTTCC : 100114

     40 : oCysAsnGlnPheGlyGluSerGluProArgProSerLysGluValGluSerPheAla :     58
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          oCysAsnGlnPheGlyGluSerGluProArgProSerLysGluValGluSerPheAla
 100115 : CTGCAATCAGTTTGGAGAATCGGAGCCCCGCCCGAGCAAGGAGGTAGAATCTTTTGCA : 100171

     59 : ArgLysAsnTyrGlyValThrPheProIlePheHisLysIleLysIleLeuGlySerG :     78
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          ArgLysAsnTyrGlyValThrPheProIlePheHisLysIleLysIleLeuGlySerG
 100172 : AGAAAAAACTACGGAGTAACATTCCCCATCTTCCACAAGATTAAGATTCTAGGATCAG : 100231

     79 : luGlyGluProAlaPheArgPheLeuArgTrpAsnPheTrpLysTyrLeuValAsn   :     97
          ||||||||||||||||||||||||||  ! ! !!.!:!  !   ! !|||..!!:!  
          luGlyGluProAlaPheArgPheLeuValGlyLysTyrLeuProCysLeuThrSer-+
 100232 : AAGGAGAACCTGCATTTAGATTTCTTGTTGGTAAATATCTGCCTTGCCTCACCAGTat : 100288

     98 : >>>> Target Intron 1 >>>>  ProGluGlyGlnValValLysPheTrpArgP :    107
                   2838 bp           |||||||||||||||||||||||||||||||
                                   +-ProGluGlyGlnValValLysPheTrpArgP
 100289 : .........................acCCTGAGGGTCAAGTTGTGAAGTTCTGGAGGC : 103156

    108 : roGluGluProIleAspValIleArgProAspIleAlaAlaLeuValArgLys :    124
          ||||||||||||||!!:|||||||||||||||||||||||||||||||||:!!
          roGluGluProIleGluValIleArgProAspIleAlaAlaLeuValArgGln
 103157 : CAGAGGAGCCCATTGAAGTCATCAGGCCTGACATAGCAGCTCTGGTTAGACAA : 103209

vulgar: SPP00001325_2.0 0 124 . gi|511782589|gb|CM001944.1|:subseq(51294294,203209) 99999 103209 + 542 M 96 288 5 0 2 I 0 2834 3 0 2 M 28 84
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-05
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|511782589|gb|CM001944.1|:subseq(51294294,203209)	exonerate:protein2genome:local	gene	100000	103209	542	+	.	gene_id 1 ; sequence SPP00001325_2.0 ; gene_orientation +
gi|511782589|gb|CM001944.1|:subseq(51294294,203209)	exonerate:protein2genome:local	cds	100000	100287	.	+	.	
gi|511782589|gb|CM001944.1|:subseq(51294294,203209)	exonerate:protein2genome:local	exon	100000	100287	.	+	.	insertions 0 ; deletions 0
gi|511782589|gb|CM001944.1|:subseq(51294294,203209)	exonerate:protein2genome:local	splice5	100288	100289	.	+	.	intron_id 1 ; splice_site "AT"
gi|511782589|gb|CM001944.1|:subseq(51294294,203209)	exonerate:protein2genome:local	intron	100288	103125	.	+	.	intron_id 1
gi|511782589|gb|CM001944.1|:subseq(51294294,203209)	exonerate:protein2genome:local	splice3	103124	103125	.	+	.	intron_id 0 ; splice_site "AC"
gi|511782589|gb|CM001944.1|:subseq(51294294,203209)	exonerate:protein2genome:local	cds	103126	103209	.	+	.	
gi|511782589|gb|CM001944.1|:subseq(51294294,203209)	exonerate:protein2genome:local	exon	103126	103209	.	+	.	insertions 0 ; deletions 0
gi|511782589|gb|CM001944.1|:subseq(51294294,203209)	exonerate:protein2genome:local	similarity	100000	103209	542	+	.	alignment_id 1 ; Query SPP00001325_2.0 ; Align 100000 1 288 ; Align 103126 97 84
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis