_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 1e-33
 Query name: gi|226817308|ref|NP_001152830.1| glutathione peroxidase precursor [Macaca mulatta]
 Query range: 1-221  (total 221)

 Target: /var/www/seblastian_output/251866867/tempfiles/temptarget.fasta
 Chromosome: your_sequence Strand: -
 Positions:
 -Exon 1  109958       110044
 -Exon 2  106402       106555
 -Exon 3  102006       102123
 -Exon 4  101411       101510
 -Exon 5  100000       100203

 Redox box: no

Query   MIRQFQACCLVLLFLVGFAQQTLKPQNRK <---Intron---> VDCNKRVTGTIYEYGALTLNSEEYIQFKQFAGKHVLFVNVATYUGLAAQYPE <-
        ||||||||||||||||||||||||||||| <   3402bp   > ||||| |||||||||||||  ||||||||||||||||||||||||||||||| < 
Target  MIRQFQACCLVLLFLVGFAQQTLKPQNRK                VDCNKGVTGTIYEYGALTLKGEEYIQFKQFAGKHVLFVNVATYUGLAAQYPE   
        aacctcgttcgcctcggtgccacaccaaa                ggtaaggagaatgtggcacagggtactactggacgctgaggattgtggctcg   
        ttgatacggtttttttgtcaactacaaga                tagaagtcgctaaagctctagaaatataatcgaattttatccaggtccaac    
        gcggtgccttcggcgtcttggcagtatgg                gtccaagaccctgtactccgtggccgcggtacgccgtccacctacgatgtt    
                                                                                                *           

Query   --Intron---> LNALQEELKNFGVVVLAFPCNQFGKQEPGTNSEILLGLKY <---Intron---> VRPGSGFVPNFQLFEKGDVNGEKEQKVFTFL
          4278bp   > |||||||||||||||||||||||||||||||||||||||| <   495bp    > |||||||||||||||||||||||||||||||
Target               LNALQEELKNFGVVVLAFPCNQFGKQEPGTNSEILLGLKY                VRPGSGFVPNFQLFEKGDVNGEKEQKVFTFL
                     cagccggcaatggggtgtctactgacgcgaatgaccgcat                gccgagtgcatcctgagggaggagcagtatc
                    atactaaataatgttttctcgaatgaaacgcacatttgta                atgcgggttcatattaagatagaaaaattctt
                    agtaagggggtttctggctcccgtaaaaaaacaaattacg                tgtattctcttcgctgagtgtaaaaggcttcg
                                                                                                            

Query   KNS <---Intron---> CPPTSDLLGSSSQLFWEPMKVHDIRWNFEKFLVGPDGVPVMRWFHRAPVSTVKSDILEYLKQFNAH
        ||| <   1207bp   > ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  KNS                CPPTSDLLGSSSQLFWEPMKVHDIRWNFEKFLVGPDGVPVMRWFHRAPVSTVKSDILEYLKQFNAH
        aat                tccatgctgttaccttgcaagcgactatgatcggcgggcgacttccgcgaagatgacgtcactagc
        aa                cgccccattgccgattgactataatggataatttgcagtcttggtagcctgctacattaataataca
        gc                cctactttgcaacaccggcggctcccgctgatgggctactcgcgccgtaccacgaccggcaggctcc
                                                                                             
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 607 ; UGA-SECIS: 1051

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = your_sequence Strand = - Positions = 99392 - 99317
 Found by:  Infernal (score=26.62) Covels (score=25.55)
 Stem2 length = 10   Apical loop length = 13   Insertion in stem2 = 0, 1
 Free Energy = -20.02

         ..(((((((.......(((((((((((((((...............))))))).))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggcca-ggcCuGAUGuu-u-uuucaugaccggc
         (({(((((((--....([[{((((((((({(.....--........)}))))).))))}]])......-..)))))))}))
 target  GAGGGGCAUC--UCCAUGACGGUGGGUCCCAAAACC--CCUCGGGGUUGGACCUUGCCAGAGCCUUCC-UUGGUGCCUGUC
                         ****           ^^^                        ****