genewise output
Score 471.31 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00001323_2.0    1 MIRQFQACCLVLLFLVGFAQQTLKPQNRK                     
                     MIRQFQACCLVLLFLVGFAQQTLKPQNRK                     
                     MIRQFQACCLVLLFLVGFAQQTLKPQNRK                     
gi|511782576|-110044 aacctcgttcgcctcggtgccacaccaaaGTGAGCA  Intron 1    
                     ttgatacggtttttttgtcaactacaaga<0-----[109957:106556
                     gcggtgccttcggcgtcttggcagtatgg                     


SPP00001323_2.0   30    VDCNKRVTGTIYEYGALTLNSEEYIQFKQFAGKHVLFVNVATYXGL 
                        VDCNK VTGTIYEYGALTL  EEYIQFKQFAGKHVLFVNVATYXGL 
                        VDCNKGVTGTIYEYGALTLKGEEYIQFKQFAGKHVLFVNVATYXGL 
gi|511782576|-106558 CAGggtaaggagaatgtggcacagggtactactggacgctgaggattgt 
                     -0>tagaagtcgctaaagctctagaaatataatcgaattttatccaggt 
                        gtccaagaccctgtactccgtggccgcggtacgccgtccacctacg 


SPP00001323_2.0   76 AAQYP                          LNALQEELKNFGVVVLAF 
                     AAQYP                          LNALQEELKNFGVVVLAF 
                     AAQYP          E:E[gaa]        LNALQEELKNFGVVVLAF 
gi|511782576|-106417 ggctcGGTAAGAA  Intron 2   CAGAAcagccggcaatggggtgt 
                     ccaac <1-----[106401:10212-1>  tactaaataatgttttct 
                     atgtt                          gtaagggggtttctggct 


SPP00001323_2.0  100 PCNQFGKQEPGTNSEILLGL                          YVR 
                     PCNQFGKQEPGTNSEILLGL                          YVR 
                     PCNQFGKQEPGTNSEILLGL           K:K[aag]       YVR 
gi|511782576|-102067 ctactgacgcgaatgaccgcAAGTGAGTG  Intron 3   CAGGtgc 
                     cgaatgaaacgcacatttgt  <2-----[102005:10151-2> atg 
                     cccgtaaaaaaacaaattac                          tgt 


SPP00001323_2.0  124 PGSGFVPNFQLFEKGDVNGEKEQKVFTFLK                    
                     PGSGFVPNFQLFEKGDVNGEKEQKVFTFLK                    
                     PGSGFVPNFQLFEKGDVNGEKEQKVFTFLK                    
gi|511782576|-101500 cgagtgcatcctgagggaggagcagtatca                    
                     cgggttcatattaagatagaaaaattctta                    
                     attctcttcgctgagtgtaaaaggcttcgg                    


SPP00001323_2.0  154                        NSCPPTSDLLGSSSQLFWEPMKVHDI 
                                            NSCPPTSDLLGSSSQLFWEPMKVHDI 
                                            NSCPPTSDLLGSSSQLFWEPMKVHDI 
gi|511782576|-101410 GTGAGTG  Intron 4   CAGattccatgctgttaccttgcaagcga 
                     <0-----[101410:10020-0>acgccccattgccgattgactataat 
                                            ccctactttgcaacaccggcggctcc 


SPP00001323_2.0  180 RWNFEKFLVGPDGVPVMRWFHRAPVSTVKSDILEYLKQFNAH        
                     RWNFEKFLVGPDGVPVMRWFHRAPVSTVKSDILEYLKQFNAH        
                     RWNFEKFLVGPDGVPVMRWFHRAPVSTVKSDILEYLKQFNAH        
gi|511782576|-100125 ctatgatcggcgggcgacttccgcgaagatgacgtcactagc        
                     ggataatttgcagtcttggtagcctgctacattaataataca        
                     cgctgatgggctactcgcgccgtaccacgaccggcaggctcc        


//
Making a E in phase 1 intron
Making a K in phase 2 intron
>gi|511782576|gb|CM001958.1|:subseq(43951595,210044).pep
MIRQFQACCLVLLFLVGFAQQTLKPQNRKVDCNKGVTGTIYEYGALTLKGEEYIQFKQFA
GKHVLFVNVATYXGLAAQYPELNALQEELKNFGVVVLAFPCNQFGKQEPGTNSEILLGLK
YVRPGSGFVPNFQLFEKGDVNGEKEQKVFTFLKNSCPPTSDLLGSSSQLFWEPMKVHDIR
WNFEKFLVGPDGVPVMRWFHRAPVSTVKSDILEYLKQFNAH
//
>gi|511782576|gb|CM001958.1|:subseq(43951595,210044).[110044:99998].sp
ATGATCCGGCAGTTTCAGGCCTGCTGTCTTGTCCTGCTGTTCCTGGTTGGCTTTGCTCAG
CAGACCCTAAAGCCTCAAAATAGGAAGGTGGATTGCAACAAAGGAGTGACAGGCACCATC
TATGAGTATGGAGCCCTTACCCTCAAGGGTGAGGAGTACATCCAGTTCAAGCAGTTTGCA
GGCAAGCACGTCCTGTTTGTCAACGTAGCCACCTATTGAGGCTTGGCAGCTCAGTATCCT
GAACTGAATGCACTACAGGAGGAGCTGAAGAATTTTGGTGTCGTTGTGTTGGCCTTTCCC
TGCAACCAGTTTGGAAAACAAGAACCAGGAACAAACTCAGAAATACTTCTTGGACTCAAG
TATGTGCGTCCAGGTAGTGGCTTTGTCCCTAATTTCCAGCTCTTTGAGAAAGGGGATGTG
AATGGAGAAAAAGAACAGAAGGTCTTTACTTTCCTGAAGAACTCCTGCCCTCCAACCTCT
GATCTTTTGGGCTCATCAAGCCAACTCTTCTGGGAGCCCATGAAGGTCCATGACATCCGC
TGGAACTTTGAGAAATTTCTGGTGGGGCCCGATGGAGTCCCTGTCATGCGCTGGTTCCAC
CGGGCTCCAGTCAGCACAGTCAAGTCAGACATCCTGGAGTACCTAAAGCAGTTCAATGCC
CAC
//
gi|511782576|gb|CM001958.1|:subseq(43951595,210044)	GeneWise	match	110044	100000	471.31	-	.	gi|511782576|gb|CM001958.1|:subseq(43951595,210044)-genewise-prediction-1
gi|511782576|gb|CM001958.1|:subseq(43951595,210044)	GeneWise	cds	110044	109958	0.00	-	0	gi|511782576|gb|CM001958.1|:subseq(43951595,210044)-genewise-prediction-1
gi|511782576|gb|CM001958.1|:subseq(43951595,210044)	GeneWise	intron	109957	106556	0.00	-	.	gi|511782576|gb|CM001958.1|:subseq(43951595,210044)-genewise-prediction-1
gi|511782576|gb|CM001958.1|:subseq(43951595,210044)	GeneWise	cds	106555	106402	0.00	-	0	gi|511782576|gb|CM001958.1|:subseq(43951595,210044)-genewise-prediction-1
gi|511782576|gb|CM001958.1|:subseq(43951595,210044)	GeneWise	intron	106401	102124	0.00	-	.	gi|511782576|gb|CM001958.1|:subseq(43951595,210044)-genewise-prediction-1
gi|511782576|gb|CM001958.1|:subseq(43951595,210044)	GeneWise	cds	102123	102006	0.00	-	2	gi|511782576|gb|CM001958.1|:subseq(43951595,210044)-genewise-prediction-1
gi|511782576|gb|CM001958.1|:subseq(43951595,210044)	GeneWise	intron	102005	101511	0.00	-	.	gi|511782576|gb|CM001958.1|:subseq(43951595,210044)-genewise-prediction-1
gi|511782576|gb|CM001958.1|:subseq(43951595,210044)	GeneWise	cds	101510	101411	0.00	-	1	gi|511782576|gb|CM001958.1|:subseq(43951595,210044)-genewise-prediction-1
gi|511782576|gb|CM001958.1|:subseq(43951595,210044)	GeneWise	intron	101410	100204	0.00	-	.	gi|511782576|gb|CM001958.1|:subseq(43951595,210044)-genewise-prediction-1
gi|511782576|gb|CM001958.1|:subseq(43951595,210044)	GeneWise	cds	100203	100000	0.00	-	0	gi|511782576|gb|CM001958.1|:subseq(43951595,210044)-genewise-prediction-1
//