Output_id:  GPx.13.selenocysteine
----------  ---------------------
-Species        Chlorocebus sabaeus                          -Taxid 60711
-Target         /home/U73970/luke/Selenoprofiles/selenoprofiles_3_installation/genome_linked/genome.fa
-Chromosome (-) gi|511782576|gb|CM001958.1|
-Program        exonerate
-Query name     gi|212549567|ref|NP_001131079.1| glutathione peroxidase 6 [Sus scrofa]
-Query range    1-220      length:221   coverage: 1.0
-Profile range  1-444      length:445   coverage: 1.0    sec_position: [192]
-ASI:           0.3575     (ignoring gaps: 0.4415)
-AWSIc:         0.7127     Z-score: 0.62
-AWSIw:         0.7084     Z-score: 0.399
-State          kept

------- alignment -------
Query   MTPQFWASCLFSLCLVGFAQLIPKEQKMK <---Intron---> MDCYKGVTGTIYEYGALTLNGEEYIPFKQYAGKHVLFVNVATYUGLTAQYPE <-
        |  || | ||  | ||||||   | |  | <   3402nt   > /|| ||||||||||||||| ||||| |||/|||||||||||||||| ||||| < 
Target  MIRQFQACCLVLLFLVGFAQQTLKPQNRK                VDCNKGVTGTIYEYGALTLKGEEYIQFKQFAGKHVLFVNVATYUGLAAQYPE   
        aacctcgttcgcctcggtgccacaccaaa                ggtaaggagaatgtggcacagggtactactggacgctgaggattgtggctcg   
        ttgatacggtttttttgtcaactacaaga   gt     ag    tagaagtcgctaaagctctagaaatataatcgaattttatccaggtccaac    
        gcggtgccttcggcgtcttggcagtatgg                gtccaagaccctgtactccgtggccgcggtacgccgtccacctacgatgtt    
                                                                                                *           

Query   --Intron---> LNALQEELKPFGVVVLGFPCNQFGKQEPAKNSEILLGLK <---Intron---> YVRPGGGFVPNFQLFEKGDVNGEKEQKVFTFL
          4278nt   > ||||||||| |||||| |||||||||||  ||||||||| <   495nt    > ||||| ||||||||||||||||||||||||||
Target               LNALQEELKNFGVVVLAFPCNQFGKQEPGTNSEILLGLK                YVRPGSGFVPNFQLFEKGDVNGEKEQKVFTFL
                     cagccggcaatggggtgtctactgacgcgaatgaccgca                tgccgagtgcatcctgagggaggagcagtatc
        gt     ag   atactaaataatgttttctcgaatgaaacgcacatttgta   gt     ag    atgcgggttcatattaagatagaaaaattctt
                    agtaagggggtttctggctcccgtaaaaaaacaaattac                gtgtattctcttcgctgagtgtaaaaggcttcg
                                                                                                            

Query   K <---Intron---> NSCPPTSDLLGSSNQLFWEPMKVHDIRWNFEKFLVGPDGVPVMRWYHRASVSTVKSDIMEYLKQFKS-
        | <   1207nt   > |||||||||||||/|||||||||||||||||||||||||||||||/||| ||||||||/|||||| / 
Target  K                NSCPPTSDLLGSSSQLFWEPMKVHDIRWNFEKFLVGPDGVPVMRWFHRAPVSTVKSDILEYLKQFNAH
        a                attccatgctgttaccttgcaagcgactatgatcggcgggcgacttccgcgaagatgacgtcactagc
        a   gt     ag    acgccccattgccgattgactataatggataatttgcagtcttggtagcctgctacattaataataca
        g                ccctactttgcaacaccggcggctcccgctgatgggctactcgcgccgtaccacgaccggcaggctcc
                                                                                             
------- positions -------
Exon 1    44061553     44061639
Exon 2    44057997     44058150
Exon 3    44053601     44053718
Exon 4    44053006     44053105
Exon 5    44051595     44051798

-------- features -------
None
--------- 3' seq --------
Total sequence length available downstream >= 6000
Sequence until first stop codon: 
TAG
 *