Command line: [exonerate -m p2g --showtargetgff -q Gpx5.fa.U_to_X -t gi|511782576|gb|CM001958.1|.fastasubseq]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00001322_2.0 # Protein # Glutathione peroxidase 5 (GPx5) # Macaque (Macaca mulatta) 
        Target: gi|511782576|gb|CM001958.1|:subseq(43975582,204803) Chlorocebus sabaeus isolate 1994-021 chromosome 17, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 1025
   Query range: 0 -> 193
  Target range: 99999 -> 104803

      1 : PheGlnMetAspCysHisLysAspGluLysGlyThrIleTyrAspTyrGluAlaIleA :     20
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          PheGlnMetAspCysHisLysAspGluLysGlyThrIleTyrAspTyrGluAlaIleA
 100000 : TTCCAGATGGATTGTCACAAAGATGAGAAAGGCACCATCTATGACTATGAGGCCATCG : 100057

     21 : laLeuAsnLysAsnGluTyrValProPheLysGlnTyrValGlyLysHisIleLeuPh :     39
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          laLeuAsnLysAsnGluTyrValProPheLysGlnTyrValGlyLysHisIleLeuPh
 100058 : CACTTAATAAGAACGAATATGTTCCCTTCAAGCAGTATGTGGGCAAGCACATCCTCTT : 100114

     40 : eValAsnValAlaThrTyrCysGlyLeuThrAlaGlnTyrPro{G}  >>>> Targe :     54
          |||||||||||||||||||||||||||||||||||||||||||{|}           2
          eValAsnValAlaThrTyrCysGlyLeuThrAlaGlnTyrPro{G}++          
 100115 : CGTCAACGTGGCCACCTACTGTGGTCTGACAGCGCAATATCCT{G}gt.......... : 100162

     55 : t Intron 1 >>>>  {lu}LeuAsnAlaLeuGlnGluGluLeuLysProTyrGlyL :     67
          258 bp           {||}|||||||||||||||||||||||||||||||||||||
                         ++{lu}LeuAsnAlaLeuGlnGluGluLeuLysProTyrGlyL
 100163 : ...............ag{AA}CTAAATGCACTCCAGGAGGAGCTGAAGCCCTATGGTC : 102456

     68 : euValValLeuGlyPheProCysAsnGlnPheGlyLysGlnGluProGlyAspAsnLy :     86
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          euValValLeuGlyPheProCysAsnGlnPheGlyLysGlnGluProGlyAspAsnLy
 102457 : TAGTCGTGCTGGGCTTTCCCTGCAACCAATTTGGAAAGCAAGAACCAGGAGATAACAA : 102513

     87 : sGluIleLeuProGlyLeu{Ly}  >>>> Target Intron 2 >>>>  {s}Tyr :     94
          |||||||||||||||||||{||}            422 bp           {|}|||
          sGluIleLeuProGlyLeu{Ly}++                         ++{s}Tyr
 102514 : AGAGATTCTTCCTGGGCTC{AA}gt.........................ag{G}TAT : 102959

     95 : ValArgProGlyGlyGlyPheValProAsnPheGlnLeuPheGluLysGlyAspValA :    114
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          ValArgProGlyGlyGlyPheValProAsnPheGlnLeuPheGluLysGlyAspValA
 102960 : GTCCGTCCAGGGGGAGGATTTGTACCTAATTTCCAGCTTTTTGAGAAAGGGGATGTGA : 103019

    115 : snGlyGluLysGluGlnLysValPheSerPheLeuLys  >>>> Target Intron :    127
          ||||||||||||||||||||||||||||||||||||||           1545 bp  
          snGlyGluLysGluGlnLysValPheSerPheLeuLys++                  
 103020 : ATGGTGAAAAAGAACAGAAAGTCTTCAGCTTCTTGAAGgt.................. : 103060

    128 :  3 >>>>  HisSerCysProHisProSerGluIleLeuGlyThrPheLysSerIleS :    143
                   |||||||||||||||||||||||||||||||||||||||||||||||||
                 ++HisSerCysProHisProSerGluIleLeuGlyThrPheLysSerIleS
 103061 : .......agCACTCCTGTCCTCATCCCTCTGAGATTTTGGGCACATTCAAATCTATAT : 104651

    144 : erTrpAspProValLysValHisAspIleArgTrpAsnPheGluLysPheLeuValGl :    162
          |||||:!!||||||||||||||||||||||||||||||||||||||||||||||||||
          erTrpAsnProValLysValHisAspIleArgTrpAsnPheGluLysPheLeuValGl
 104652 : CCTGGAACCCTGTAAAGGTCCATGACATCCGCTGGAACTTTGAAAAGTTCCTGGTGGG : 104708

    163 : yProAspGlyIleProValMetArgTrpSerHisArgAlaThrValSerSerValLys :    181
          ||||||||||||||||||||||||||||||||||!:!|||||||||||||||||||||
          yProAspGlyIleProValMetArgTrpSerHisGlnAlaThrValSerSerValLys
 104709 : GCCTGATGGAATCCCTGTCATGCGCTGGTCCCACCAGGCTACCGTCAGCTCAGTAAAG : 104765

    182 : ThrAspIleLeuAlaTyrLeuLysGlnPheLysThr :    193
          ||||||||||||||||||||||||||||||||||||
          ThrAspIleLeuAlaTyrLeuLysGlnPheLysThr
 104766 : ACAGACATCCTGGCGTACTTGAAGCAATTCAAAACC : 104803

vulgar: SPP00001322_2.0 0 193 . gi|511782576|gb|CM001958.1|:subseq(43975582,204803) 99999 104803 + 1025 M 53 159 S 0 1 5 0 2 I 0 2254 3 0 2 S 1 2 M 38 114 S 0 2 5 0 2 I 0 418 3 0 2 S 1 1 M 33 99 5 0 2 I 0 1541 3 0 2 M 67 201
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-05
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|511782576|gb|CM001958.1|:subseq(43975582,204803)	exonerate:protein2genome:local	gene	100000	104803	1025	+	.	gene_id 1 ; sequence SPP00001322_2.0 ; gene_orientation +
gi|511782576|gb|CM001958.1|:subseq(43975582,204803)	exonerate:protein2genome:local	cds	100000	100159	.	+	.	
gi|511782576|gb|CM001958.1|:subseq(43975582,204803)	exonerate:protein2genome:local	exon	100000	100159	.	+	.	insertions 0 ; deletions 0
gi|511782576|gb|CM001958.1|:subseq(43975582,204803)	exonerate:protein2genome:local	splice5	100160	100161	.	+	.	intron_id 1 ; splice_site "GT"
gi|511782576|gb|CM001958.1|:subseq(43975582,204803)	exonerate:protein2genome:local	intron	100160	102417	.	+	.	intron_id 1
gi|511782576|gb|CM001958.1|:subseq(43975582,204803)	exonerate:protein2genome:local	splice3	102416	102417	.	+	.	intron_id 0 ; splice_site "AG"
gi|511782576|gb|CM001958.1|:subseq(43975582,204803)	exonerate:protein2genome:local	cds	102418	102535	.	+	.	
gi|511782576|gb|CM001958.1|:subseq(43975582,204803)	exonerate:protein2genome:local	exon	102418	102535	.	+	.	insertions 0 ; deletions 0
gi|511782576|gb|CM001958.1|:subseq(43975582,204803)	exonerate:protein2genome:local	splice5	102536	102537	.	+	.	intron_id 2 ; splice_site "GT"
gi|511782576|gb|CM001958.1|:subseq(43975582,204803)	exonerate:protein2genome:local	intron	102536	102957	.	+	.	intron_id 2
gi|511782576|gb|CM001958.1|:subseq(43975582,204803)	exonerate:protein2genome:local	splice3	102956	102957	.	+	.	intron_id 1 ; splice_site "AG"
gi|511782576|gb|CM001958.1|:subseq(43975582,204803)	exonerate:protein2genome:local	cds	102958	103057	.	+	.	
gi|511782576|gb|CM001958.1|:subseq(43975582,204803)	exonerate:protein2genome:local	exon	102958	103057	.	+	.	insertions 0 ; deletions 0
gi|511782576|gb|CM001958.1|:subseq(43975582,204803)	exonerate:protein2genome:local	splice5	103058	103059	.	+	.	intron_id 3 ; splice_site "GT"
gi|511782576|gb|CM001958.1|:subseq(43975582,204803)	exonerate:protein2genome:local	intron	103058	104602	.	+	.	intron_id 3
gi|511782576|gb|CM001958.1|:subseq(43975582,204803)	exonerate:protein2genome:local	splice3	104601	104602	.	+	.	intron_id 2 ; splice_site "AG"
gi|511782576|gb|CM001958.1|:subseq(43975582,204803)	exonerate:protein2genome:local	cds	104603	104803	.	+	.	
gi|511782576|gb|CM001958.1|:subseq(43975582,204803)	exonerate:protein2genome:local	exon	104603	104803	.	+	.	insertions 0 ; deletions 0
gi|511782576|gb|CM001958.1|:subseq(43975582,204803)	exonerate:protein2genome:local	similarity	100000	104803	1025	+	.	alignment_id 1 ; Query SPP00001322_2.0 ; Align 100000 1 159 ; Align 102420 55 114 ; Align 102959 94 99 ; Align 104603 127 201
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00001322_2.0 # Protein # Glutathione peroxidase 5 (GPx5) # Macaque (Macaca mulatta) 
        Target: gi|511782576|gb|CM001958.1|:subseq(43975582,204803) Chlorocebus sabaeus isolate 1994-021 chromosome 17, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 786
   Query range: 0 -> 191
  Target range: 82574 -> 76021

     1 : PheGlnMetAspCysHisLysAspGluLysGlyThrIleTyrAspTyrGluAlaIleAla :    20
         ||||||:!!||||||:!!|||!  ! !! !||||||||||||!!:|||! !|||:!!.!!
         PheGlnValAspCysAsnLysGlyValThrGlyThrIleTyrGluTyrGlyAlaLeuThr
 82574 : TTCCAGGTGGATTGCAACAAAGGAGTGACAGGCACCATCTATGAGTATGGAGCCCTTACC : 82517

    21 : LeuAsnLysAsnGluTyrValProPheLysGlnTyrValGlyLysHisIleLeuPheVal :    40
         |||!!.   .!.||||||:!!! !|||||||||!:!!.!|||||||||:!!|||||||||
         LeuLysGlyGluGluTyrIleGlnPheLysGlnPheAlaGlyLysHisValLeuPheVal
 82516 : CTCAAGGGTGAGGAGTACATCCAGTTCAAGCAGTTTGCAGGCAAGCACGTCCTGTTTGTC : 82457

    41 : AsnValAlaThrTyrCysGlyLeuThrAlaGlnTyrPro{G}  >>>> Target Intr :    54
         |||||||||||||||!! ||||||.!!||||||||||||{|}           4278 bp
         AsnValAlaThrTyr***GlyLeuAlaAlaGlnTyrPro{G}++                
 82456 : AACGTAGCCACCTATTGAGGCTTGGCAGCTCAGTATCCT{G}gt................ : 82412

    55 : on 1 >>>>  {lu}LeuAsnAlaLeuGlnGluGluLeuLysProTyrGlyLeuValVal :    69
                    {||}|||||||||||||||||||||||||||  !!:!|||:!!||||||
                  ++{lu}LeuAsnAlaLeuGlnGluGluLeuLysAsnPheGlyValValVal
 82411 : .........ag{AA}CTGAATGCACTACAGGAGGAGCTGAAGAATTTTGGTGTCGTTGTG : 78092

    70 : LeuGlyPheProCysAsnGlnPheGlyLysGlnGluProGlyAspAsnLysGluIleLeu :    89
         |||!.!||||||||||||||||||||||||||||||||||||   |||..!|||||||||
         LeuAlaPheProCysAsnGlnPheGlyLysGlnGluProGlyThrAsnSerGluIleLeu
 78091 : TTGGCCTTTCCCTGCAACCAGTTTGGAAAACAAGAACCAGGAACAAACTCAGAAATACTT : 78032

    90 : ProGlyLeu{Ly}  >>>> Target Intron 2 >>>>  {s}TyrValArgProGly :    98
         ! !||||||{||}            495 bp           {|}|||||||||||||||
         LeuGlyLeu{Ly}++                         ++{s}TyrValArgProGly
 78031 : CTTGGACTC{AA}gt.........................ag{G}TATGTGCGTCCAGGT : 77510

    99 : GlyGlyPheValProAsnPheGlnLeuPheGluLysGlyAspValAsnGlyGluLysGlu :   118
         .!!|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         SerGlyPheValProAsnPheGlnLeuPheGluLysGlyAspValAsnGlyGluLysGlu
 77509 : AGTGGCTTTGTCCCTAATTTCCAGCTCTTTGAGAAAGGGGATGTGAATGGAGAAAAAGAA : 77450

   119 : GlnLysValPheSerPheLeuLys  >>>> Target Intron 3 >>>>  HisSerC :   129
         ||||||||||||!!!|||||||||           1207 bp           :!!||||
         GlnLysValPheThrPheLeuLys++                         ++AsnSerC
 77449 : CAGAAGGTCTTTACTTTCCTGAAGgt.........................agAACTCCT : 76210

   130 : ysProHisProSerGluIleLeuGlyThrPheLysSerIleSerTrpAspProValLysV :   149
         |||||!   !!|||!!::!!||||||:!!!  !....!:!!! !|||!!:|||:!!||||
         ysProProThrSerAspLeuLeuGlySerSerSerGlnLeuPheTrpGluProMetLysV
 76209 : GCCCTCCAACCTCTGATCTTTTGGGCTCATCAAGCCAACTCTTCTGGGAGCCCATGAAGG : 76150

   150 : alHisAspIleArgTrpAsnPheGluLysPheLeuValGlyProAspGlyIleProValM :   169
         ||||||||||||||||||||||||||||||||||||||||||||||||||:!!|||||||
         alHisAspIleArgTrpAsnPheGluLysPheLeuValGlyProAspGlyValProValM
 76149 : TCCATGACATCCGCTGGAACTTTGAGAAATTTCTGGTGGGGCCCGATGGAGTCCCTGTCA : 76090

   170 : etArgTrpSerHisArgAlaThrValSerSerValLysThrAspIleLeuAlaTyrLeuL :   189
         ||||||||! !||||||||| !!||||||!!!||||||:!!|||||||||! !|||||||
         etArgTrpPheHisArgAlaProValSerThrValLysSerAspIleLeuGluTyrLeuL
 76089 : TGCGCTGGTTCCACCGGGCTCCAGTCAGCACAGTCAAGTCAGACATCCTGGAGTACCTAA : 76030

   190 : ysGlnPhe :   191
         ||||||||
         ysGlnPhe
 76029 : AGCAGTTC : 76022

vulgar: SPP00001322_2.0 0 191 . gi|511782576|gb|CM001958.1|:subseq(43975582,204803) 82574 76021 - 786 M 53 159 S 0 1 5 0 2 I 0 4274 3 0 2 S 1 2 M 38 114 S 0 2 5 0 2 I 0 491 3 0 2 S 1 1 M 33 99 5 0 2 I 0 1203 3 0 2 M 65 195
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-05
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|511782576|gb|CM001958.1|:subseq(43975582,204803)	exonerate:protein2genome:local	gene	76022	82574	786	-	.	gene_id 1 ; sequence SPP00001322_2.0 ; gene_orientation +
gi|511782576|gb|CM001958.1|:subseq(43975582,204803)	exonerate:protein2genome:local	cds	82415	82574	.	-	.	
gi|511782576|gb|CM001958.1|:subseq(43975582,204803)	exonerate:protein2genome:local	exon	82415	82574	.	-	.	insertions 0 ; deletions 0
gi|511782576|gb|CM001958.1|:subseq(43975582,204803)	exonerate:protein2genome:local	splice5	82413	82414	.	-	.	intron_id 1 ; splice_site "GT"
gi|511782576|gb|CM001958.1|:subseq(43975582,204803)	exonerate:protein2genome:local	intron	78137	82414	.	-	.	intron_id 1
gi|511782576|gb|CM001958.1|:subseq(43975582,204803)	exonerate:protein2genome:local	splice3	78137	78138	.	-	.	intron_id 0 ; splice_site "AG"
gi|511782576|gb|CM001958.1|:subseq(43975582,204803)	exonerate:protein2genome:local	cds	78019	78136	.	-	.	
gi|511782576|gb|CM001958.1|:subseq(43975582,204803)	exonerate:protein2genome:local	exon	78019	78136	.	-	.	insertions 0 ; deletions 0
gi|511782576|gb|CM001958.1|:subseq(43975582,204803)	exonerate:protein2genome:local	splice5	78017	78018	.	-	.	intron_id 2 ; splice_site "GT"
gi|511782576|gb|CM001958.1|:subseq(43975582,204803)	exonerate:protein2genome:local	intron	77524	78018	.	-	.	intron_id 2
gi|511782576|gb|CM001958.1|:subseq(43975582,204803)	exonerate:protein2genome:local	splice3	77524	77525	.	-	.	intron_id 1 ; splice_site "AG"
gi|511782576|gb|CM001958.1|:subseq(43975582,204803)	exonerate:protein2genome:local	cds	77424	77523	.	-	.	
gi|511782576|gb|CM001958.1|:subseq(43975582,204803)	exonerate:protein2genome:local	exon	77424	77523	.	-	.	insertions 0 ; deletions 0
gi|511782576|gb|CM001958.1|:subseq(43975582,204803)	exonerate:protein2genome:local	splice5	77422	77423	.	-	.	intron_id 3 ; splice_site "GT"
gi|511782576|gb|CM001958.1|:subseq(43975582,204803)	exonerate:protein2genome:local	intron	76217	77423	.	-	.	intron_id 3
gi|511782576|gb|CM001958.1|:subseq(43975582,204803)	exonerate:protein2genome:local	splice3	76217	76218	.	-	.	intron_id 2 ; splice_site "AG"
gi|511782576|gb|CM001958.1|:subseq(43975582,204803)	exonerate:protein2genome:local	cds	76022	76216	.	-	.	
gi|511782576|gb|CM001958.1|:subseq(43975582,204803)	exonerate:protein2genome:local	exon	76022	76216	.	-	.	insertions 0 ; deletions 0
gi|511782576|gb|CM001958.1|:subseq(43975582,204803)	exonerate:protein2genome:local	similarity	76022	82574	786	-	.	alignment_id 1 ; Query SPP00001322_2.0 ; Align 82575 1 159 ; Align 78135 55 114 ; Align 77523 94 99 ; Align 76217 127 195
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis