genewise output
Score 450.91 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00001322_2.0    1 FQMDCHKDEKGTIYDYEAIALNKNEYVPFKQYVGKHILFVNVATYCGLT 
                     FQMDCHKDEKGTIYDYEAIALNKNEYVPFKQYVGKHILFVNVATYCGLT 
                     FQMDCHKDEKGTIYDYEAIALNKNEYVPFKQYVGKHILFVNVATYCGLT 
gi|511782576|g100000 tcagtcaggagaatgtggagcaaagtgctactggacactgaggattgca 
                     tatagaaaaagctaaaactctaaaaatctaaatgaattttatccaggtc 
                     cggttcatgaccctctgccattgcattccggtgcgccccccgcccttga 


SPP00001322_2.0   50 AQYP                          LNALQEELKPYGLVVLGFP 
                     AQYP                          LNALQEELKPYGLVVLGFP 
                     AQYP          E:E[gaa]        LNALQEELKPYGLVVLGFP 
gi|511782576|g100147 gctcGGTAAGAA  Intron 1   CAGAAcagccggcactgcggcgtc 
                     caac <1-----[100160:10241-1>  tactaaatacagttttgtc 
                     gatt                          atacgggggcttacggctc 


SPP00001322_2.0   74 CNQFGKQEPGDNKEILPGL                          YVRP 
                     CNQFGKQEPGDNKEILPGL                          YVRP 
                     CNQFGKQEPGDNKEILPGL           K:K[aag]       YVRP 
gi|511782576|g102477 tactgacgcggaagaccgcAAGTAAGTG  Intron 2   CAGGtgcc 
                     gaatgaaacgaaaattcgt  <2-----[102536:10295-2> atgc 
                     ccatagaaaatcagtttgc                          tcta 


SPP00001322_2.0   98 GGGFVPNFQLFEKGDVNGEKEQKVFSFLK                     
                     GGGFVPNFQLFEKGDVNGEKEQKVFSFLK                     
                     GGGFVPNFQLFEKGDVNGEKEQKVFSFLK                     
gi|511782576|g102971 gggtgcatcctgagggaggagcagtattaGTGAGTA  Intron 3    
                     gggttcatattaagatagaaaaattgtta<0-----[103058:104602
                     gaatattcgttgagtgttaaagaccccgg                     


SPP00001322_2.0  127    HSCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLVGPDGIPVMRWS 
                        HSCPHPSEILGTFKSISW+PVKVHDIRWNFEKFLVGPDGIPVMRWS 
                        HSCPHPSEILGTFKSISWNPVKVHDIRWNFEKFLVGPDGIPVMRWS 
gi|511782576|g104600 TAGcttccctgatgatatattacgagcgactatgatcggcggacgactt 
                     -0>acgcaccattgctactcgactataatggataatttgcagtcttggc 
                        cctttctgtgcacatacgctagctcccgctagcgggttactcgcgc 


SPP00001322_2.0  173 HRATVSSVKTDILAYLKQFKT                             
                     H+ATVSSVKTDILAYLKQFKT                             
                     HQATVSSVKTDILAYLKQFKT                             
gi|511782576|g104741 ccgagatgaagacgttactaa                             
                     aacctgctacattcataatac                             
                     cgtcccaagaccggcggacac                             


//
Making a E in phase 1 intron
Making a K in phase 2 intron
>gi|511782576|gb|CM001958.1|:subseq(43975582,204803).pep
FQMDCHKDEKGTIYDYEAIALNKNEYVPFKQYVGKHILFVNVATYCGLTAQYPELNALQE
ELKPYGLVVLGFPCNQFGKQEPGDNKEILPGLKYVRPGGGFVPNFQLFEKGDVNGEKEQK
VFSFLKHSCPHPSEILGTFKSISWNPVKVHDIRWNFEKFLVGPDGIPVMRWSHQATVSSV
KTDILAYLKQFKT
//
>gi|511782576|gb|CM001958.1|:subseq(43975582,204803).[100000:104803].sp
TTCCAGATGGATTGTCACAAAGATGAGAAAGGCACCATCTATGACTATGAGGCCATCGCA
CTTAATAAGAACGAATATGTTCCCTTCAAGCAGTATGTGGGCAAGCACATCCTCTTCGTC
AACGTGGCCACCTACTGTGGTCTGACAGCGCAATATCCTGAACTAAATGCACTCCAGGAG
GAGCTGAAGCCCTATGGTCTAGTCGTGCTGGGCTTTCCCTGCAACCAATTTGGAAAGCAA
GAACCAGGAGATAACAAAGAGATTCTTCCTGGGCTCAAGTATGTCCGTCCAGGGGGAGGA
TTTGTACCTAATTTCCAGCTTTTTGAGAAAGGGGATGTGAATGGTGAAAAAGAACAGAAA
GTCTTCAGCTTCTTGAAGCACTCCTGTCCTCATCCCTCTGAGATTTTGGGCACATTCAAA
TCTATATCCTGGAACCCTGTAAAGGTCCATGACATCCGCTGGAACTTTGAAAAGTTCCTG
GTGGGGCCTGATGGAATCCCTGTCATGCGCTGGTCCCACCAGGCTACCGTCAGCTCAGTA
AAGACAGACATCCTGGCGTACTTGAAGCAATTCAAAACC
//
gi|511782576|gb|CM001958.1|:subseq(43975582,204803)	GeneWise	match	100000	104803	450.91	+	.	gi|511782576|gb|CM001958.1|:subseq(43975582,204803)-genewise-prediction-1
gi|511782576|gb|CM001958.1|:subseq(43975582,204803)	GeneWise	cds	100000	100159	0.00	+	0	gi|511782576|gb|CM001958.1|:subseq(43975582,204803)-genewise-prediction-1
gi|511782576|gb|CM001958.1|:subseq(43975582,204803)	GeneWise	intron	100160	102417	0.00	+	.	gi|511782576|gb|CM001958.1|:subseq(43975582,204803)-genewise-prediction-1
gi|511782576|gb|CM001958.1|:subseq(43975582,204803)	GeneWise	cds	102418	102535	0.00	+	2	gi|511782576|gb|CM001958.1|:subseq(43975582,204803)-genewise-prediction-1
gi|511782576|gb|CM001958.1|:subseq(43975582,204803)	GeneWise	intron	102536	102957	0.00	+	.	gi|511782576|gb|CM001958.1|:subseq(43975582,204803)-genewise-prediction-1
gi|511782576|gb|CM001958.1|:subseq(43975582,204803)	GeneWise	cds	102958	103057	0.00	+	1	gi|511782576|gb|CM001958.1|:subseq(43975582,204803)-genewise-prediction-1
gi|511782576|gb|CM001958.1|:subseq(43975582,204803)	GeneWise	intron	103058	104602	0.00	+	.	gi|511782576|gb|CM001958.1|:subseq(43975582,204803)-genewise-prediction-1
gi|511782576|gb|CM001958.1|:subseq(43975582,204803)	GeneWise	cds	104603	104803	0.00	+	0	gi|511782576|gb|CM001958.1|:subseq(43975582,204803)-genewise-prediction-1
//