_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 1e-60
 Query name: gi|90903240|ref|NP_001034937.1| phospholipid hydroperoxide glutathione peroxidase, mitochondrial isoform C precursor [Homo sapiens]
 Query range: 1-234  (total 234)

 Target: /var/www/seblastian_output/220730240/tempfiles/temptarget.fasta
 Chromosome: your_sequence Strand: +
 Positions:
 -Exon 1  49546        49740
 -Exon 2  50000        50094
 -Exon 3  50182        50326
 -Exon 4  50480        50631
 -Exon 5  50911        50935
 -Exon 6  51081        51140
 -Exon 7  51219        51248

 Redox box: no

Query   MGRAGAGSPGRRRQRCQSRGRRRPRAPRRRKAPACRRRRARRRRKKPCPRSLRPEIHECPKSQDP <---Intron---> CASRDDWRCARSMHEFSAK
        ||||||||| ||||||||||||||||||||| |||||||||||||/|||||| |||||||/|||| <   259bp    > |||||||||||||||||||
Target  MGRAGAGSPRRRRQRCQSRGRRRPRAPRRRKTPACRRRRARRRRKEPCPRSLGPEIHECPESQDP                CASRDDWRCARSMHEFSAK
        agcggggtcaccacctcacgaccccgccccaacgtacaagccccagctccatgcgacgtcgtcgc                tgtcggtctgctacgttga
        tggcgcgccggggaggaggggggcgccgggacccgggggcggggaacgcggtgcataagcacaac                gccgaagggcgctaatcca
        gccgcacccgccgggcgcgcagggactagggcagcgcggggcggggctcccgaggccatcgcgcg                cgcgccgctgccgcgtccg
                                                                                                            

Query   DIDGHMVNLDKYR <---Intron---> GFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQE <---Intron---> PGSNEE
        ||||||||||||| <    87bp    > ||||||||||||||||||||||||||||||||||||||||||||||||| <   153bp    > ||||||
Target  DIDGHMVNLDKYR                GFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQE                PGSNEE
        gaggcagacgatc                gtgtagaaggtctgaaggataccggccgctggtgtcacgtctactgacg                cgaagg
        atagattataaag                gttgttcatccaggacataacattatacgacaggtgttctcgaatgaa                acggaaa
        cccgcgtcgcgc                ggcgcccccgccgacgcagcctgtccgccactgctggcgccatcgcggg                gagtcag
                                                 *                                                          

Query   IKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNA <---Intron---> IKWNFTKFL <---Intron---> IDKNGCVVKRYGPM
        ||||||||||||||||||||||||||||||||||||||||||||| <   279bp    > ||||||||| <   145bp    > ||||| ||||||||
Target  IKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNA                IKWNFTKFL                IDKNGSVVKRYGPM
        aagtgggtagatgataaatgaggggccctataaaccagagacgag                aatataatc                agaagtggactgca
        taatccgaatatattgatgtagaacactgagtatacagagttgac                tagatcat                ttaaagcttagagct
        cagccgccccaccgccgacgcgtcccgggggggcgcgcgccgat                ccggcccgc                ctcgcccggggtacg
                                                                                                            

Query   EEPLVI <---Intron---> EKDLPHYF
        |||||| <    78bp    > ||||||||
Target  EEPLVI                EKDLPHYF
        ggccga                gagccctt
        aacttt                aaatcaat
        gacgga                ggcgcctc
                                      
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 47 ; UGA-SECIS: 419

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = your_sequence Strand = + Positions = 51296 - 51375
 Found by:  Infernal (score=26.98) Covels (score=34.62)
 Stem2 length = 8   Apical loop length = 18   Insertion in stem2 = 0, 0
 Free Energy = -7.14

         ..(((((((.............(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcg------UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..([(({((.............([[{(({((((((.......-...........))))))}))}]])..--..-.))}))])..
 target  CGGAGCCUUCCACCGGCACCCAUGACGGCCUGCCUGCAAACC-AGCUCCUGGUGAGGCAGACCCGAAAA--UC-CAGCGUGCAC
                               ****           ^^^                       ****                 
_________________________________.______________________._____________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |        newSP         |  secis_index:2     SeB_blast category:ALI_X |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_____________________________________________________________________________

 Blastx evalue: 1e-11
 Query name: gi|441644007|ref|XP_004090561.1| PREDICTED: LOW QUALITY PROTEIN: putative uncharacterized protein C3orf66-like [Nomascus leucogenys]
 Query range: 168-204  (total 204)

 Target: /var/www/seblastian_output/220730240/tempfiles/temptarget.fasta
 Chromosome: your_sequence Strand: +
 Positions:
 -Exon 1  75634        75699
 -Exon 2  75702        75746

 Redox box: no

Query   FCIFTREGVSPCWSGWSXTPDL ! FRAME ! VICPPRPPKVLGLQA
        ||||||/ ||| |  |  |||| ! SHIFT ! ||| || ||||||||
Target  FCIFTRDRVSPRWPAWFUTPDL           VICLPRHPKVLGLQA
        ttataagagtcctcgtttacgc    2bp    gatcccccagtgtcg
        tgttcgagtccggccgtgccat           ttgtcgacattgtac
        tttttacgtaatgacgtattcc           gccgtgtaaggaagc
                         *                              
 Sequence until next stop: 
TGA
 * 

 Distance CDS-SECIS: 902 ; UGA-SECIS: 959

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = your_sequence Strand = + Positions = 76649 - 76725
 Found by:  Infernal (score=16.06) Covels (score=6.99)
 Stem2 length = 8   Apical loop length = 17   Insertion in stem2 = 1, 0
 Free Energy = -9.45

         ..(((((((.......((((((((((.(((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ...(({(((.......([[((((({{.((((.................))))}})))))]])..--....)))}))...
 target  CAUGCCCAGCCACAUAUGAUGUCUCACGCCUGUAAUCCCAGCACUUGGAGGCCAAGGCGGAAGA--UCGUUUGAGCCCA
                         ****             ^^                       ****