Command line: [exonerate -m p2g --showtargetgff -q GPx_none.fa.U_to_X -t gi|511782587|gb|CM001946.1|.fastasubseq]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00001326_2.0 # Protein # Glutathione peroxidase (GPx) # Macaque (Macaca mulatta) 
        Target: gi|511782587|gb|CM001946.1|:subseq(774789,200611) Chlorocebus sabaeus isolate 1994-021 chromosome 6, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 767
   Query range: 0 -> 149
  Target range: 99999 -> 101110

      1 : AlaArgSerMetHisGluPheSerAlaLysAspIleAspGlyHisMetValAsnLeuA :     20
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          AlaArgSerMetHisGluPheSerAlaLysAspIleAspGlyHisMetValAsnLeuA
 100000 : GCGCGCTCCATGCACGAGTTTTCCGCCAAGGACATCGACGGGCACATGGTTAACCTGG : 100057

     21 : spLysTyr{Ar}  >>>> Target Intron 1 >>>>  {g}GlyPheValCysIl :     28
          ||||||||{||}            87 bp            {|}||||||||||||||
          spLysTyr{Ar}++                         ++{g}GlyPheValCysIl
 100058 : ACAAGTAC{CG}gt.........................ag{G}GGGTTCGTGTGCAT : 100168

     29 : eValThrAsnValAlaSerGlnUnkGlyLysThrGluValAsnTyrThrGlnLeuVal :     47
          ||||||||||||||||||||||   |||||||||||||||||||||||||||||||||
          eValThrAsnValAlaSerGln***GlyLysThrGluValAsnTyrThrGlnLeuVal
 100169 : CGTCACCAACGTGGCCTCCCAGTGAGGCAAGACCGAAGTGAACTACACTCAGCTTGTC : 100225

     48 : AspLeuHisAlaArgTyrAlaGluCysGlyLeuArgIleLeuAlaPheProCysAsnG :     67
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          AspLeuHisAlaArgTyrAlaGluCysGlyLeuArgIleLeuAlaPheProCysAsnG
 100226 : GACCTGCACGCCCGATACGCTGAGTGCGGTTTGCGGATCCTGGCCTTCCCATGTAACC : 100285

     68 : lnPheGlyLysGln  >>>> Target Intron 2 >>>>  GluProGlySerAsn :     76
          ||||||||||||||            153 bp           |||||||||||||||
          lnPheGlyLysGln++                         ++GluProGlySerAsn
 100286 : AGTTCGGGAAGCAGgt.........................agGAGCCAGGGAGTAAC : 100465

     77 : GluGluIleLysGluPheAlaAlaGlyTyrAsnValLysPheAspMetPheSerLysI :     96
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          GluGluIleLysGluPheAlaAlaGlyTyrAsnValLysPheAspMetPheSerLysI
 100466 : GAAGAGATCAAAGAGTTCGCCGCGGGCTACAACGTCAAATTCGACATGTTCAGCAAGA : 100525

     97 : leCysValAsnGlyAspAspAlaHisProLeuTrpLysTrpMetLysIleGlnProLy :    115
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          leCysValAsnGlyAspAspAlaHisProLeuTrpLysTrpMetLysIleGlnProLy
 100526 : TATGCGTGAACGGGGATGACGCCCACCCGCTGTGGAAGTGGATGAAGATCCAGCCCAA : 100582

    116 : sGlyLysGlyIleLeuGly{As}  >>>> Target Intron 3 >>>>  {n}Ala :    123
          |||||||||||||||||||{||}            279 bp           {|}|||
          sGlyLysGlyIleLeuGly{As}++                         ++{n}Ala
 100583 : GGGCAAGGGCATCCTGGGA{AA}gt.........................ag{T}GCC : 100885

    124 : IleLysTrpAsnPheThrLys  >>>> Target Intron 4 >>>>  PheLeuIl :    133
          |||||||||||||||||||||            145 bp           ||||||||
          IleLysTrpAsnPheThrLys++                         ++PheLeuIl
 100886 : ATCAAGTGGAACTTCACCAAGgt.........................agTTCCTCAT : 101060

    134 : eAspLysAsnGlyCysValValLysArgTyrGlyProMetGluGluPro :    149
          |||||||||||||! !|||||||||||||||||||||||||||||||||
          eAspLysAsnGlySerValValLysArgTyrGlyProMetGluGluPro
 101061 : TGACAAGAACGGCTCCGTGGTGAAGCGGTATGGACCCATGGAGGAACCC : 101110

vulgar: SPP00001326_2.0 0 149 . gi|511782587|gb|CM001946.1|:subseq(774789,200611) 99999 101110 + 767 M 22 66 S 0 2 5 0 2 I 0 83 3 0 2 S 1 1 M 48 144 5 0 2 I 0 149 3 0 2 M 50 150 S 0 2 5 0 2 I 0 275 3 0 2 S 1 1 M 8 24 5 0 2 I 0 141 3 0 2 M 19 57
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-05
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|511782587|gb|CM001946.1|:subseq(774789,200611)	exonerate:protein2genome:local	gene	100000	101110	767	+	.	gene_id 1 ; sequence SPP00001326_2.0 ; gene_orientation +
gi|511782587|gb|CM001946.1|:subseq(774789,200611)	exonerate:protein2genome:local	cds	100000	100067	.	+	.	
gi|511782587|gb|CM001946.1|:subseq(774789,200611)	exonerate:protein2genome:local	exon	100000	100067	.	+	.	insertions 0 ; deletions 0
gi|511782587|gb|CM001946.1|:subseq(774789,200611)	exonerate:protein2genome:local	splice5	100068	100069	.	+	.	intron_id 1 ; splice_site "GT"
gi|511782587|gb|CM001946.1|:subseq(774789,200611)	exonerate:protein2genome:local	intron	100068	100154	.	+	.	intron_id 1
gi|511782587|gb|CM001946.1|:subseq(774789,200611)	exonerate:protein2genome:local	splice3	100153	100154	.	+	.	intron_id 0 ; splice_site "AG"
gi|511782587|gb|CM001946.1|:subseq(774789,200611)	exonerate:protein2genome:local	cds	100155	100299	.	+	.	
gi|511782587|gb|CM001946.1|:subseq(774789,200611)	exonerate:protein2genome:local	exon	100155	100299	.	+	.	insertions 0 ; deletions 0
gi|511782587|gb|CM001946.1|:subseq(774789,200611)	exonerate:protein2genome:local	splice5	100300	100301	.	+	.	intron_id 2 ; splice_site "GT"
gi|511782587|gb|CM001946.1|:subseq(774789,200611)	exonerate:protein2genome:local	intron	100300	100452	.	+	.	intron_id 2
gi|511782587|gb|CM001946.1|:subseq(774789,200611)	exonerate:protein2genome:local	splice3	100451	100452	.	+	.	intron_id 1 ; splice_site "AG"
gi|511782587|gb|CM001946.1|:subseq(774789,200611)	exonerate:protein2genome:local	cds	100453	100604	.	+	.	
gi|511782587|gb|CM001946.1|:subseq(774789,200611)	exonerate:protein2genome:local	exon	100453	100604	.	+	.	insertions 0 ; deletions 0
gi|511782587|gb|CM001946.1|:subseq(774789,200611)	exonerate:protein2genome:local	splice5	100605	100606	.	+	.	intron_id 3 ; splice_site "GT"
gi|511782587|gb|CM001946.1|:subseq(774789,200611)	exonerate:protein2genome:local	intron	100605	100883	.	+	.	intron_id 3
gi|511782587|gb|CM001946.1|:subseq(774789,200611)	exonerate:protein2genome:local	splice3	100882	100883	.	+	.	intron_id 2 ; splice_site "AG"
gi|511782587|gb|CM001946.1|:subseq(774789,200611)	exonerate:protein2genome:local	cds	100884	100908	.	+	.	
gi|511782587|gb|CM001946.1|:subseq(774789,200611)	exonerate:protein2genome:local	exon	100884	100908	.	+	.	insertions 0 ; deletions 0
gi|511782587|gb|CM001946.1|:subseq(774789,200611)	exonerate:protein2genome:local	splice5	100909	100910	.	+	.	intron_id 4 ; splice_site "GT"
gi|511782587|gb|CM001946.1|:subseq(774789,200611)	exonerate:protein2genome:local	intron	100909	101053	.	+	.	intron_id 4
gi|511782587|gb|CM001946.1|:subseq(774789,200611)	exonerate:protein2genome:local	splice3	101052	101053	.	+	.	intron_id 3 ; splice_site "AG"
gi|511782587|gb|CM001946.1|:subseq(774789,200611)	exonerate:protein2genome:local	cds	101054	101110	.	+	.	
gi|511782587|gb|CM001946.1|:subseq(774789,200611)	exonerate:protein2genome:local	exon	101054	101110	.	+	.	insertions 0 ; deletions 0
gi|511782587|gb|CM001946.1|:subseq(774789,200611)	exonerate:protein2genome:local	similarity	100000	101110	767	+	.	alignment_id 1 ; Query SPP00001326_2.0 ; Align 100000 1 66 ; Align 100156 24 144 ; Align 100453 72 150 ; Align 100885 123 24 ; Align 101054 131 57
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis