genewise output
Score 282.16 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00001326_2.0    1 ARSMHEFSAKDIDGHMVNLDKY                          G 
                     ARSMHEFSAKDIDGHMVNLDKY                          G 
                     ARSMHEFSAKDIDGHMVNLDKY           R:R[cgg]       G 
gi|511782587|g100000 gctacgttgagaggcagacgatCGGTGGGCG  Intron 1   CAGGg 
                     cgctaatccaatagattataaa  <2-----[100068:10015-2> g 
                     gccgcgtccgcccgcgtcgcgc                          g 


SPP00001326_2.0   25 FVCIVTNVASQXGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQ   
                     FVCIVTNVASQXGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQ   
                     FVCIVTNVASQXGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQ   
gi|511782587|g100159 tgtagaaggtctgaaggataccggccgctggtgtcacgtctactgac   
                     ttgttcatccaggacataacattatacgacaggtgttctcgaatgaa   
                     cgcccccgccgacgcagcctgtccgccactgctggcgccatcgcggg   


SPP00001326_2.0   72                        EPGSNEEIKEFAAGYNVKFDMFSKIC 
                                            EPGSNEEIKEFAAGYNVKFDMFSKIC 
                                            EPGSNEEIKEFAAGYNVKFDMFSKIC 
gi|511782587|g100300 GTAGGCG  Intron 2   CAGgcgaaggaagtgggtagatgataaat 
                     <0-----[100300:10045-0>acggaaataatccgaatatattgatg 
                                            gagtcagcagccgccccaccgccgac 


SPP00001326_2.0   98 VNGDDAHPLWKWMKIQPKGKGILG                          
                     VNGDDAHPLWKWMKIQPKGKGILG                          
                     VNGDDAHPLWKWMKIQPKGKGILG           N:N[aat]       
gi|511782587|g100531 gaggggccctataaaccagagacgAAGTGCGTG  Intron 3       
                     tagaacactgagtatacagagttg  <2-----[100605:100883   
                     gcgtcccgggggggcgcgcgccga                          


SPP00001326_2.0  122     AIKWNFTK                       FLIDKNGCVVKRYG 
                         AIKWNFTK                       FLIDKNG VVKRYG 
                         AIKWNFTK                       FLIDKNGSVVKRYG 
gi|511782587|g100881 CAGTgaatataaGTAAGGG  Intron 4   CAGtcagaagtggactg 
                     -2> ctagatca<0-----[100909:10105-0>tttaaagcttagag 
                         ccggcccg                       cctcgcccggggta 


SPP00001326_2.0  145 PMEEP                                             
                     PMEEP                                             
                     PMEEP                                             
gi|511782587|g101096 caggc                                             
                     ctaac                                             
                     cggac                                             


//
Making a R in phase 2 intron
Making a N in phase 2 intron
>gi|511782587|gb|CM001946.1|:subseq(774789,200611).pep
ARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQXGKTEVNYTQLVDLHARYAECGLRI
LAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGIL
GNAIKWNFTKFLIDKNGSVVKRYGPMEEP
//
>gi|511782587|gb|CM001946.1|:subseq(774789,200611).[100000:101110].sp
GCGCGCTCCATGCACGAGTTTTCCGCCAAGGACATCGACGGGCACATGGTTAACCTGGAC
AAGTACCGGGGGTTCGTGTGCATCGTCACCAACGTGGCCTCCCAGTGAGGCAAGACCGAA
GTGAACTACACTCAGCTTGTCGACCTGCACGCCCGATACGCTGAGTGCGGTTTGCGGATC
CTGGCCTTCCCATGTAACCAGTTCGGGAAGCAGGAGCCAGGGAGTAACGAAGAGATCAAA
GAGTTCGCCGCGGGCTACAACGTCAAATTCGACATGTTCAGCAAGATATGCGTGAACGGG
GATGACGCCCACCCGCTGTGGAAGTGGATGAAGATCCAGCCCAAGGGCAAGGGCATCCTG
GGAAATGCCATCAAGTGGAACTTCACCAAGTTCCTCATTGACAAGAACGGCTCCGTGGTG
AAGCGGTATGGACCCATGGAGGAACCC
//
gi|511782587|gb|CM001946.1|:subseq(774789,200611)	GeneWise	match	100000	101110	282.16	+	.	gi|511782587|gb|CM001946.1|:subseq(774789,200611)-genewise-prediction-1
gi|511782587|gb|CM001946.1|:subseq(774789,200611)	GeneWise	cds	100000	100067	0.00	+	0	gi|511782587|gb|CM001946.1|:subseq(774789,200611)-genewise-prediction-1
gi|511782587|gb|CM001946.1|:subseq(774789,200611)	GeneWise	intron	100068	100154	0.00	+	.	gi|511782587|gb|CM001946.1|:subseq(774789,200611)-genewise-prediction-1
gi|511782587|gb|CM001946.1|:subseq(774789,200611)	GeneWise	cds	100155	100299	0.00	+	1	gi|511782587|gb|CM001946.1|:subseq(774789,200611)-genewise-prediction-1
gi|511782587|gb|CM001946.1|:subseq(774789,200611)	GeneWise	intron	100300	100452	0.00	+	.	gi|511782587|gb|CM001946.1|:subseq(774789,200611)-genewise-prediction-1
gi|511782587|gb|CM001946.1|:subseq(774789,200611)	GeneWise	cds	100453	100604	0.00	+	0	gi|511782587|gb|CM001946.1|:subseq(774789,200611)-genewise-prediction-1
gi|511782587|gb|CM001946.1|:subseq(774789,200611)	GeneWise	intron	100605	100883	0.00	+	.	gi|511782587|gb|CM001946.1|:subseq(774789,200611)-genewise-prediction-1
gi|511782587|gb|CM001946.1|:subseq(774789,200611)	GeneWise	cds	100884	100908	0.00	+	1	gi|511782587|gb|CM001946.1|:subseq(774789,200611)-genewise-prediction-1
gi|511782587|gb|CM001946.1|:subseq(774789,200611)	GeneWise	intron	100909	101053	0.00	+	.	gi|511782587|gb|CM001946.1|:subseq(774789,200611)-genewise-prediction-1
gi|511782587|gb|CM001946.1|:subseq(774789,200611)	GeneWise	cds	101054	101110	0.00	+	0	gi|511782587|gb|CM001946.1|:subseq(774789,200611)-genewise-prediction-1
//