_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 6e-20
 Query name: gi|226531093|ref|NP_001152772.1| glutathione peroxidase 3 precursor [Macaca mulatta] >gi|190359358|sp|Q4AEH4.2|GPX3_MACFU RecName: Full=Glutathione peroxidase 3; Short=GPx-3; Short=GSHPx-3; AltName: Full=Plasma glutathione peroxidase; Short=GPx-P; Short=GSHPx-P; Flags: Precursor >gi|71891635|dbj|BAE17016.1| glutathione peroxidase 3 [Macaca fuscata]
 Query range: 1-226  (total 226)

 Target: /var/www/seblastian_output/450611174/tempfiles/temptarget.fasta
 Chromosome: your_sequence Strand: +
 Positions:
 -Exon 1  95375        95461
 -Exon 2  100006       100159
 -Exon 3  101565       101682
 -Exon 4  102103       102202
 -Exon 5  102581       102799

 Redox box: no

Query   MARLLQASCLLSLLLAGFLPQSRGQDKSK <---Intron---> MDCHGGVSGTIYEYGALTIDGEEYIPFKQYIGKYVLFVNVASYUGLTGQYIE <-
        ||||||||||||||||||||||||||||| <   4544bp   > |||||||||||||||||||||||||||||| ||||||||||||||||||||| < 
Target  MARLLQASCLLSLLLAGFLPQSRGQDKSK                MDCHGGVSGTIYEYGALTIDGEEYIPFKQYTGKYVLFVNVASYUGLTGQYIE   
        agccccgttcctcccggtcccacgcgata                agtcgggagaatgtggcaaggggtactactagatgctgaggattgcagctag   
        tcgttaccgttctttcgttcagggaaaca                tagaggtggctaaagctctagaaatctaaacgaattttatcgaggtcgaat    
        gcgagggccgccacgccccggcgaatggg                gccttcgccctcgcacccttgggccccggctcaccctccgcccacggcgct    
                                                                                                *           

Query   --Intron---> LNALQEELAPFGLVLLGFPCNQFGKQEPGENSEILPSLKY <---Intron---> VRPGGGFVPNFQLFEKGDVNGEKEQKFYTFL
          1405bp   > |||||||||||||||||||||||||||||||||||||||| <   420bp    > |||||||||||||||||||||||||||||||
Target               LNALQEELAPFGLVLLGFPCNQFGKQEPGENSEILPSLKY                VRPGGGFVPNFQLFEKGDVNGEKEQKFYTFL
                     cagccggcgctgcgccgtctactgacgcggatgaccacat                gccgggtgcatcctgagggaggagcattatc
                    atactaaatcctgttttgtcgaatgaaacgaacattcgta                atgcgggttcatattaagatagaaaaatactt
                    agtaaaagtaattgctcctcccataagaacgcagctcccg                tcaatactcttcgctgagtgtagaggacctca
                                                                                                            

Query   KNS <---Intron---> CPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPVMRWHHRTTISNVKMDILSYMRRQAALGVKRK
        ||| <   378bp    > ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Target  KNS                CPPTSELLGTSDRLFWEPMKVQDIRWNFEKFLVGPDGIPVMRWHHRTTISNVKMDILSYMRRQAALGVKRK
        aat                tccatgccgatgccttgcaagcgactatgatcggcggacgactcccaaaaagaagacttaaccggcggaaa
        aa                cgccccattgccagttgactataatggataatttgcagtcttggaagcctgatatattcatggacctgtaga
        gc                cttccggcgtatccccgacggcgcccgctggcgggattatcgcgccgcgcctcggccgccggggacggcggg
                                                                                                  
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 656 ; UGA-SECIS: 1115

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = your_sequence Strand = + Positions = 103456 - 103529
 Found by:  Infernal (score=22.73) Covels (score=27.8)
 Stem2 length = 8   Apical loop length = 15   Insertion in stem2 = 0, 0
 Free Energy = -18.06

         ..(((((((.......(((((((((((((((...............)))))))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         ..(((({((---((..([[((({(((({((......--.........))}))))})))]])......-.))))}))))..
 target  GGUGGCGUC---UUCAUGAGGGAGGGGCCCAAAGCC--CUUGUGGGCGGACCUCCCCUGAGCCUGUC-UGAGGGGCCAGC
                         ****          ^^^                        ****